Factsheet for VIT_11s0016g01630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006562.1-P	Field mustard	cytosol	32.67	47.14
CDY51845	Canola	cytosol	32.67	47.14
VIT_11s0016g01500.t01	Wine grape	nucleus	88.12	35.32
VIT_04s0008g01670.t01	Wine grape	nucleus	83.17	31.82
VIT_09s0002g01600.t01	Wine grape	nucleus	82.18	31.8
KRH61563	Soybean	cytosol	66.34	30.45
AT5G26210.1	Thale cress	nucleus	71.29	28.24
CDY52629	Canola	nucleus	69.31	26.82
Bra009887.1-P	Field mustard	nucleus	69.31	26.82
CDX88221	Canola	nucleus	69.31	26.82
CDY24988	Canola	cytosol, nucleus, plastid	66.34	26.8
CDX87061	Canola	cytosol	67.33	26.46
Bra036568.1-P	Field mustard	cytosol	66.34	26.07
CDY19781	Canola	cytosol	66.34	26.07
AT3G42790.1	Thale cress	nucleus	64.36	26.0
CDX92458	Canola	cytosol, nucleus, plastid	65.35	25.68
CDY05535	Canola	cytosol, nucleus, plastid	64.36	25.59
Bra020543.1-P	Field mustard	cytosol, nucleus, plastid	64.36	25.59
CDY16540	Canola	cytosol	66.34	25.57
Bra020107.1-P	Field mustard	cytosol	63.37	25.2
CDY70751	Canola	cytosol	63.37	25.2
AT5G20510.1	Thale cress	cytosol	63.37	24.62
Bra002307.1-P	Field mustard	nucleus	68.32	24.47
Os07t0608400-01	Rice	nucleus	67.33	24.46
CDY12340	Canola	cytosol, nucleus, plastid	61.39	24.41
Bra034950.1-P	Field mustard	nucleus	61.39	24.41
CDX87962	Canola	cytosol, nucleus, plastid	60.4	24.02
VIT_12s0035g01980.t01	Wine grape	nucleus	56.44	22.53
VIT_08s0105g00360.t01	Wine grape	nucleus	52.48	21.81
TraesCS2A01G172100.2	Wheat	nucleus	57.43	21.25
TraesCS2B01G198500.2	Wheat	nucleus	57.43	21.25
TraesCS2D01G179400.2	Wheat	nucleus	57.43	21.25
VIT_13s0067g01000.t01	Wine grape	nucleus	50.49	21.16
GSMUA_Achr10P...	Banana	nucleus	50.49	20.24
EER97523	Sorghum	nucleus	50.49	18.96
HORVU2Hr1G031990.2	Barley	nucleus	56.44	18.81
GSMUA_AchrUn_...	Banana	nucleus	49.51	16.56
Zm00001d022110_P002	Maize	nucleus	49.51	15.87
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	24.75	11.42
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	24.75	11.42

Protein Annotations

ArrayExpress:VIT_11s0016g01630	EMBL:FN595756	EnsemblPlants:VIT_11s0016g01630.t01	EnsemblPlantsGene:VIT_11s0016g01630	Gene3D:3.30.40.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12321
PANTHER:PTHR12321:SF65	ProteinID:CBI27855	ProteinID:CBI27855.3	SEG:seg	SUPFAM:SSF57903	UniParc:UPI00015C8526
UniProt:D7TCJ7	MapMan:15.5.8	:	:	:	:

Description

No Description!

Coordinates

chr11:+:1315763..1316667

Molecular Weight (calculated)

11134.8 Da

IEP (calculated)

4.644

GRAVY (calculated)

-0.796

Length

101 amino acids

Sequence
(BLAST)

001: MINDLPTIFE VVTGAAKKQV KEKSSVSNHS SNKSKSKSKV RGSESAKYSK VGQPKDEEEG LDEVDEEEHG DTLCGACGEN YASDEFWICC DICEKWFHGS
101: V

Best Arabidopsis Sequence Match ( AT3G42790.1 )
(BLAST)

001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA

Arabidopsis Description

AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.