Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 32.54 | 67.77 |
| VIT_11s0016g01500.t01 | Wine grape | nucleus | 65.08 | 65.08 |
| KRH19253 | Soybean | nucleus | 64.29 | 64.54 |
| KRH37475 | Soybean | nucleus | 63.1 | 64.11 |
| KRH02655 | Soybean | nucleus | 63.49 | 63.49 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 61.51 | 61.75 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 59.52 | 59.29 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 59.52 | 59.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 70.63 | 58.94 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 59.13 | 58.89 |
| GSMUA_Achr11P... | Banana | nucleus | 58.33 | 58.33 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 58.33 | 58.1 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 57.54 | 56.64 |
| GSMUA_Achr10P... | Banana | nucleus | 55.95 | 55.51 |
| EER97523 | Sorghum | nucleus | 59.13 | 55.39 |
| TraesCS2A01G172100.2 | Wheat | nucleus | 59.92 | 55.31 |
| TraesCS2B01G198500.2 | Wheat | nucleus | 59.92 | 55.31 |
| TraesCS2D01G179400.2 | Wheat | nucleus | 59.92 | 55.31 |
| Os07t0608400-01 | Rice | nucleus | 60.71 | 55.04 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 52.38 | 54.55 |
| GSMUA_Achr10P... | Banana | nucleus | 51.98 | 54.13 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 51.19 | 53.31 |
| VIT_11s0016g01630.t01 | Wine grape | plastid | 20.24 | 50.49 |
| GSMUA_AchrUn_... | Banana | plastid | 25.0 | 49.22 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 59.13 | 49.17 |
| KRH61563 | Soybean | cytosol | 41.27 | 47.27 |
| Zm00001d022110_P002 | Maize | nucleus | 58.33 | 46.67 |
| GSMUA_Achr10P... | Banana | nucleus | 41.67 | 46.05 |
| GSMUA_Achr10P... | Banana | cytosol | 30.95 | 43.09 |
| GSMUA_Achr10P... | Banana | nucleus | 43.65 | 42.31 |
| GSMUA_Achr10P... | Banana | cytosol | 24.6 | 41.33 |
| GSMUA_Achr10P... | Banana | nucleus | 9.13 | 41.07 |
| GSMUA_Achr10P... | Banana | cytosol | 26.59 | 35.08 |
| GSMUA_Achr10P... | Banana | cytosol | 25.0 | 32.64 |
| GSMUA_Achr10P... | Banana | extracellular | 15.48 | 27.08 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr10G29570_001 | EnsemblPlants:GSMUA_Achr10P29570_001 | EnsemblPlants:GSMUA_Achr10T29570_001 |
| InterPro:IPR013083 | InterPro:IPR019787 | UniProt:M0RMI1 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000296EE0F |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr10G29570_001]
Coordinates
chr10:+:32049816..32057849
Molecular Weight (calculated)
28668.8 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.731
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRGSAAQNS RVLEVFRDIK GRRAGILKAL TTDFEEFYQQ CDPGNKRSKE NLCLYGFPTE QWEVDLPSDE VPPEIPEPVL GINFARDGME KKSWLSLVAL
101: HSDAWLLALA SYFGGRFQFD KKQRKSLLDM VTDLPTLCEI VSGKNQEKSS GSKNISNKSK SNSKLKASEY QAKNTKAKHA KEEDEDLIEE DDEDNYLCAA
201: CGESSVPDNF WIFCDTCEKW FHGKCVKVTP AKAEHIKNYK CPWCSNKRMR TT
101: HSDAWLLALA SYFGGRFQFD KKQRKSLLDM VTDLPTLCEI VSGKNQEKSS GSKNISNKSK SNSKLKASEY QAKNTKAKHA KEEDEDLIEE DDEDNYLCAA
201: CGESSVPDNF WIFCDTCEKW FHGKCVKVTP AKAEHIKNYK CPWCSNKRMR TT
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.