Factsheet for GSMUA_Achr10P04400_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	20.14	51.79
GSMUA_AchrUn_...	Banana	plastid	31.25	35.16
GSMUA_Achr6P28820_001	Banana	nucleus	37.5	21.34
GSMUA_Achr11P...	Banana	nucleus	36.81	21.03
GSMUA_Achr8P32300_001	Banana	nucleus	36.11	20.31
GSMUA_Achr2P05660_001	Banana	nucleus	35.42	20.16
GSMUA_Achr10P...	Banana	nucleus	35.42	20.08
GSMUA_Achr7P02940_001	Banana	nucleus	34.72	19.76
GSMUA_Achr8P30680_001	Banana	nucleus	34.03	19.52
GSMUA_Achr3P16750_001	Banana	nucleus	34.03	19.37
GSMUA_Achr10P...	Banana	nucleus	32.64	18.08
GSMUA_Achr7P15530_001	Banana	nucleus	28.47	16.94
GSMUA_Achr10P...	Banana	nucleus	28.47	16.94
GSMUA_Achr2P18960_001	Banana	nucleus	28.47	16.94
KRH26115	Soybean	endoplasmic reticulum, extracellular	9.72	15.91
GSMUA_Achr10P...	Banana	nucleus	25.0	15.79
GSMUA_Achr10P...	Banana	nucleus	27.08	15.48
GSMUA_Achr10P...	Banana	cytosol	14.58	11.6
GSMUA_AchrUn_...	Banana	nucleus	23.61	11.26
GSMUA_Achr10P...	Banana	cytosol	4.86	4.67
GSMUA_Achr10P...	Banana	cytosol	6.25	4.66
GSMUA_Achr10P...	Banana	cytosol	5.56	4.19
GSMUA_AchrUn_...	Banana	cytosol	2.08	2.48

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr10G04400_001
EnsemblPlants:GSMUA_Achr10P04400_001	EnsemblPlants:GSMUA_Achr10T04400_001	InterPro:IPR013083	InterPro:IPR019787	UniProt:M0RFB7	PFAM:PF00628
ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	SMART:SM00249	SUPFAM:SSF57903
UniParc:UPI000296A6F7	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Putative PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr10G04400_001]

Coordinates

chr10:+:14064872..14066921

Molecular Weight (calculated)

16792.0 Da

IEP (calculated)

4.957

GRAVY (calculated)

-0.391

Length

144 amino acids

Sequence
(BLAST)

001: MYIYIYIYVY ICMSRLFNMI NSNPTIYEVI FGTVKMPITL SKSNEGESNS KSGSGRQNLG LPLSLIEKEE NDEDDVELYT MGDDTSSIIC GACGNRFAFS
101: EYWILCNMCV TWYHSRCVRT TPEQYEQLEE YRCPRCCRQK RART

Best Arabidopsis Sequence Match ( AT3G42790.1 )
(BLAST)

001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA

Arabidopsis Description

AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.