Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 72.38 | 68.59 |
| GSMUA_Achr10P... | Banana | cytosol | 50.83 | 61.33 |
| GSMUA_AchrUn_... | Banana | cytosol | 39.23 | 58.68 |
| GSMUA_Achr10P... | Banana | cytosol | 50.83 | 47.67 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 51.38 | 36.76 |
| GSMUA_Achr10P... | Banana | nucleus | 50.83 | 36.22 |
| GSMUA_Achr11P... | Banana | nucleus | 49.17 | 35.32 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 49.17 | 35.18 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 48.62 | 35.06 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 48.62 | 34.78 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 49.17 | 34.77 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 47.51 | 33.99 |
| GSMUA_Achr10P... | Banana | nucleus | 44.75 | 31.15 |
| GSMUA_Achr10P... | Banana | nucleus | 41.44 | 30.99 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 41.44 | 30.99 |
| GSMUA_Achr10P... | Banana | nucleus | 43.09 | 30.95 |
| GSMUA_Achr10P... | Banana | nucleus | 38.12 | 30.26 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 40.33 | 30.17 |
| CDY11330 | Canola | mitochondrion | 30.39 | 29.89 |
| CDX80967 | Canola | mitochondrion | 29.28 | 29.28 |
| Bra005861.1-P | Field mustard | mitochondrion | 29.28 | 29.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.33 | 24.17 |
| Os01t0158800-00 | Rice | plastid | 28.18 | 21.43 |
| GSMUA_Achr10P... | Banana | extracellular | 11.6 | 14.58 |
| GSMUA_AchrUn_... | Banana | plastid | 9.39 | 13.28 |
| GSMUA_Achr10P... | Banana | nucleus | 1.66 | 5.36 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P04340_001 | EnsemblPlants:GSMUA_Achr10T04340_001 | EnsemblPlantsGene:GSMUA_Achr10G04340_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | InterPro:Alfin | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | PFAM:PF12165 | UniParc:UPI0002959E4F |
| UniProt:M0RFB1 | MapMan:15.5.8 | : | : | : | : |
Description
PHD finger protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G04340_001]
Coordinates
chr10:+:14008631..14010279
Molecular Weight (calculated)
20858.1 Da
IEP (calculated)
8.463
GRAVY (calculated)
-0.487
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRKGKGQPI TSWTIHMIFR DFLGKRAGLI KALTTDYEKF RQQCDPQKPY MCLYGCPDET WELKEPPDVP HELPEPNIGI NFARDGMPEK EWLGRIAIHS
101: DAWLYSYAFY IAIRADLDAE TRMRLFDMIN FNPTIYEIVR GTVNTKRAKE KPPGTSSKKV SSFIAIFLAS CVPTSSNRER C
101: DAWLYSYAFY IAIRADLDAE TRMRLFDMIN FNPTIYEIVR GTVNTKRAKE KPPGTSSKKV SSFIAIFLAS CVPTSSNRER C
001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMVSLM LSFNKIQNIN YELRTNQILY
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMVSLM LSFNKIQNIN YELRTNQILY
Arabidopsis Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.