Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P30890_001 | |
| GSMUA_Achr7P16220_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | GSMUA_Achr6P30890_001 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | GSMUA_Achr7P16220_001 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 43.48 | 90.91 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 89.72 | 88.67 |
| GSMUA_Achr10P... | Banana | nucleus | 82.21 | 81.89 |
| GSMUA_AchrUn_... | Banana | plastid | 41.11 | 81.25 |
| GSMUA_Achr11P... | Banana | nucleus | 80.63 | 80.95 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 80.63 | 80.63 |
| CDY17594 | Canola | cytosol | 37.55 | 80.51 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 80.24 | 80.24 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 79.84 | 79.84 |
| Solyc01g102760.2.1 | Tomato | nucleus | 73.12 | 74.6 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 73.12 | 73.71 |
| Solyc01g102750.2.1 | Tomato | nucleus | 72.33 | 73.49 |
| KRH01887 | Soybean | nucleus | 73.12 | 73.41 |
| PGSC0003DMT400047018 | Potato | nucleus | 71.94 | 73.39 |
| KRH51269 | Soybean | nucleus | 72.33 | 72.91 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 71.94 | 71.94 |
| Bra024817.1-P | Field mustard | nucleus | 69.17 | 71.14 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 67.98 | 70.49 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 67.98 | 70.49 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 67.98 | 70.49 |
| CDY03049 | Canola | cytosol | 67.98 | 70.2 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 69.96 | 69.14 |
| AT1G14510.1 | Thale cress | nucleus | 68.38 | 68.65 |
| CDX84026 | Canola | nucleus | 67.59 | 68.4 |
| Bra016698.1-P | Field mustard | cytosol | 66.8 | 67.6 |
| CDX96851 | Canola | cytosol | 66.8 | 67.6 |
| CDX81645 | Canola | cytosol | 64.43 | 67.08 |
| CDY53545 | Canola | cytosol | 64.43 | 67.08 |
| CDY17593 | Canola | cytosol | 30.83 | 66.1 |
| Bra026825.1-P | Field mustard | nucleus | 63.64 | 65.98 |
| CDY65375 | Canola | nucleus | 62.85 | 65.16 |
| Bra026210.1-P | Field mustard | nucleus | 64.03 | 64.8 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 60.08 | 62.81 |
| CDY45267 | Canola | nucleus | 50.2 | 62.25 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 59.29 | 61.98 |
| GSMUA_Achr10P... | Banana | nucleus | 59.29 | 61.98 |
| GSMUA_Achr10P... | Banana | nucleus | 58.89 | 59.13 |
| GSMUA_Achr10P... | Banana | nucleus | 48.22 | 53.51 |
| GSMUA_Achr10P... | Banana | cytosol | 36.76 | 51.38 |
| GSMUA_Achr10P... | Banana | nucleus | 51.78 | 50.38 |
| GSMUA_Achr10P... | Banana | cytosol | 29.64 | 50.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.94 | 46.03 |
| GSMUA_Achr10P... | Banana | nucleus | 9.49 | 42.86 |
| GSMUA_Achr10P... | Banana | cytosol | 31.23 | 41.36 |
| GSMUA_Achr10P... | Banana | cytosol | 29.64 | 38.86 |
| GSMUA_Achr10P... | Banana | extracellular | 19.76 | 34.72 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr7G02940_001 | EnsemblPlants:GSMUA_Achr7P02940_001 | EnsemblPlants:GSMUA_Achr7T02940_001 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M0TE84 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0002958FCE | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr7G02940_001]
Coordinates
chr7:+:2348868..2357161
Molecular Weight (calculated)
28585.3 Da
IEP (calculated)
4.830
GRAVY (calculated)
-0.762
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAGGGPFRT AEDVFRDFRG RRAGMIKALT TDVEKFYQQC DPEKENLCLY GLPTETWEVT LPAEEVPPEL PEPALGINFA RDGMEEKDWL ALVAVHSDAW
101: LLSVAFYFGA RFGFDKESRR RLFNMINNLP TIYEVVTGTT TKQSKEKTSN SNSKNKSNSK TQSRPAEPQA KVSKMPPKED EDSGAEDEED EEDHENTLCG
201: ACGDNYANDE FWICCDVCEK WFHGKCVKIT PARAEHIKQY KCPSCSTSKR ARV
101: LLSVAFYFGA RFGFDKESRR RLFNMINNLP TIYEVVTGTT TKQSKEKTSN SNSKNKSNSK TQSRPAEPQA KVSKMPPKED EDSGAEDEED EEDHENTLCG
201: ACGDNYANDE FWICCDVCEK WFHGKCVKIT PARAEHIKQY KCPSCSTSKR ARV
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.