Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016698.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX84026 | Canola | nucleus | 99.2 | 99.2 |
| CDX81645 | Canola | cytosol | 88.0 | 90.53 |
| CDY53545 | Canola | cytosol | 87.2 | 89.71 |
| AT1G14510.1 | Thale cress | nucleus | 89.6 | 88.89 |
| CDY17594 | Canola | cytosol | 39.2 | 83.05 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 78.4 | 80.33 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 78.4 | 80.33 |
| KRH01887 | Soybean | nucleus | 80.8 | 80.16 |
| KRH51269 | Soybean | nucleus | 80.0 | 79.68 |
| CDY03049 | Canola | cytosol | 76.0 | 77.55 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 78.0 | 77.08 |
| Solyc01g102760.2.1 | Tomato | nucleus | 76.0 | 76.61 |
| Solyc01g102750.2.1 | Tomato | nucleus | 75.6 | 75.9 |
| PGSC0003DMT400047018 | Potato | nucleus | 75.2 | 75.81 |
| CDY17593 | Canola | cytosol | 35.6 | 75.42 |
| GSMUA_AchrUn_... | Banana | cytosol | 35.6 | 73.55 |
| CDY51845 | Canola | cytosol | 20.4 | 72.86 |
| CDY65375 | Canola | nucleus | 68.8 | 70.49 |
| GSMUA_Achr10P... | Banana | nucleus | 71.6 | 70.47 |
| CDY45267 | Canola | nucleus | 57.2 | 70.1 |
| EES08261 | Sorghum | nucleus | 69.6 | 68.5 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 69.2 | 68.38 |
| Os11t0244800-01 | Rice | nucleus | 69.2 | 68.11 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 68.8 | 67.98 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 68.8 | 67.72 |
| TraesCS4D01G085300.1 | Wheat | peroxisome | 68.4 | 67.32 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 68.4 | 67.32 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 67.6 | 66.8 |
| Zm00001d010241_P002 | Maize | cytosol | 43.2 | 66.67 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 67.6 | 66.54 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 67.2 | 66.4 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 67.6 | 66.02 |
| Zm00001d038208_P001 | Maize | nucleus | 67.2 | 65.62 |
| CDY70751 | Canola | cytosol | 66.4 | 65.35 |
| Os05t0419100-01 | Rice | nucleus | 67.2 | 65.12 |
| GSMUA_Achr11P... | Banana | nucleus | 65.6 | 65.08 |
| EES18243 | Sorghum | nucleus | 66.8 | 64.98 |
| CDX87061 | Canola | cytosol | 66.8 | 64.98 |
| CDY19781 | Canola | cytosol | 66.8 | 64.98 |
| CDY52629 | Canola | nucleus | 67.6 | 64.75 |
| CDX88221 | Canola | nucleus | 67.2 | 64.37 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 64.8 | 63.78 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 65.2 | 63.42 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 64.4 | 63.39 |
| EES05274 | Sorghum | nucleus | 64.8 | 63.28 |
| KXG33847 | Sorghum | nucleus | 64.8 | 63.28 |
| CDY16540 | Canola | cytosol | 66.0 | 62.98 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 65.6 | 62.36 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 64.0 | 62.26 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 54.4 | 62.1 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 62.0 | 62.0 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 65.2 | 61.98 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 65.2 | 61.98 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 62.8 | 61.81 |
| OQU78932 | Sorghum | nucleus | 64.0 | 61.78 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 64.0 | 61.07 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 64.0 | 60.84 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 64.0 | 60.61 |
| GSMUA_AchrUn_... | Banana | plastid | 30.8 | 60.16 |
| Os02t0564100-01 | Rice | nucleus | 64.0 | 59.93 |
| Os04t0444900-01 | Rice | nucleus | 61.2 | 59.77 |
| KXG26388 | Sorghum | cytosol | 59.6 | 59.6 |
| CDY00726 | Canola | nucleus | 58.4 | 59.59 |
| CDX73886 | Canola | nucleus | 58.4 | 59.59 |
| Zm00001d041767_P002 | Maize | nucleus | 62.8 | 59.25 |
| Os01t0887700-01 | Rice | nucleus | 64.4 | 59.19 |
| CDY08544 | Canola | nucleus | 58.0 | 58.7 |
| CDY36305 | Canola | cytosol | 58.4 | 58.4 |
| CDY01002 | Canola | nucleus | 58.0 | 58.0 |
| CDX98851 | Canola | nucleus | 55.2 | 57.5 |
| CDX70142 | Canola | cytosol | 54.8 | 57.08 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 64.0 | 56.74 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 64.8 | 56.45 |
| Zm00001d012196_P005 | Maize | nucleus | 64.0 | 55.75 |
| Zm00001d023962_P001 | Maize | nucleus | 64.0 | 51.95 |
| Zm00001d025504_P001 | Maize | nucleus | 48.8 | 49.19 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 65.2 | 46.57 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 52.8 | 45.83 |
| GSMUA_Achr10P... | Banana | nucleus | 43.2 | 41.54 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 42.0 | 37.1 |
| CDX80967 | Canola | mitochondrion | 26.8 | 37.02 |
| CDY11330 | Canola | mitochondrion | 27.2 | 36.96 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 41.6 | 36.75 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 41.6 | 36.75 |
| Zm00001d025491_P002 | Maize | nucleus | 51.6 | 35.44 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 29.6 | 33.79 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 29.6 | 33.79 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 42.4 | 29.86 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:A0A078E6K0 | InterPro:Alfin | EnsemblPlants:CDX96851 | ProteinID:CDX96851 |
| ProteinID:CDX96851.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | EnsemblPlantsGene:GSBRNA2T00103092001 |
| InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF60 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0002545C70 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
BnaA08g23940D
Coordinates
chrLK031895:+:1254116..1255809
Molecular Weight (calculated)
28180.1 Da
IEP (calculated)
5.424
GRAVY (calculated)
-0.699
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGIQNPIHR TVEEVFSDFK GRRAGLLKAL TTDGQKFFLQ CDPEKENLCL YGLPNETWEV NLPVDEVPPE LPEPALGINF ARDGMPEKDW ITLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINEL PTIFELITGN AKQSKDQSAN HNSSRSKSSG VKPRQSESHT KASKMSPPPR EDDESGEDEE DDEQGAVCGA
201: CGDNYDDFWI CCDACEKWFH GKCVKITPAK AEHIKHYKCP TCSTNKKMRA
101: WLISVAFYFG ARFGFGKNER KRLFQMINEL PTIFELITGN AKQSKDQSAN HNSSRSKSSG VKPRQSESHT KASKMSPPPR EDDESGEDEE DDEQGAVCGA
201: CGDNYDDFWI CCDACEKWFH GKCVKITPAK AEHIKHYKCP TCSTNKKMRA
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.