Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G403600.1 | Wheat | cytosol | 99.24 | 99.24 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 99.24 | 99.24 |
| KXG33847 | Sorghum | nucleus | 82.89 | 85.16 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 82.51 | 84.44 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 81.75 | 81.75 |
| Os01t0887700-01 | Rice | nucleus | 84.03 | 81.25 |
| CDY17594 | Canola | cytosol | 35.36 | 78.81 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 73.76 | 75.78 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 99.24 | 74.57 |
| Zm00001d012196_P005 | Maize | nucleus | 79.85 | 73.17 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 69.96 | 72.44 |
| Bra024817.1-P | Field mustard | nucleus | 65.4 | 69.92 |
| Solyc01g102760.2.1 | Tomato | nucleus | 65.78 | 69.76 |
| PGSC0003DMT400047018 | Potato | nucleus | 65.02 | 68.95 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 66.16 | 68.77 |
| Solyc01g102750.2.1 | Tomato | nucleus | 65.02 | 68.67 |
| CDY03049 | Canola | cytosol | 63.88 | 68.57 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 63.5 | 68.44 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 63.5 | 68.44 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 63.5 | 68.44 |
| AT1G14510.1 | Thale cress | nucleus | 65.4 | 68.25 |
| KRH01887 | Soybean | nucleus | 65.02 | 67.86 |
| KRH51269 | Soybean | nucleus | 64.64 | 67.73 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 65.78 | 67.58 |
| CDX81645 | Canola | cytosol | 61.98 | 67.08 |
| Bra026825.1-P | Field mustard | nucleus | 61.22 | 65.98 |
| CDY53545 | Canola | cytosol | 60.84 | 65.84 |
| CDX84026 | Canola | nucleus | 62.36 | 65.6 |
| CDY17593 | Canola | cytosol | 29.28 | 65.25 |
| CDX96851 | Canola | cytosol | 61.98 | 65.2 |
| Bra016698.1-P | Field mustard | cytosol | 61.98 | 65.2 |
| TraesCS2B01G198500.2 | Wheat | nucleus | 66.16 | 63.74 |
| CDY65375 | Canola | nucleus | 58.17 | 62.7 |
| Bra026210.1-P | Field mustard | nucleus | 59.32 | 62.4 |
| CDY45267 | Canola | nucleus | 47.91 | 61.76 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 52.85 | 55.38 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 52.85 | 54.09 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 41.06 | 38.16 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 28.52 | 34.25 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 28.52 | 34.25 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS3B01G437100 |
| EnsemblPlants:TraesCS3B01G437100.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd15613 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:676206714..676211143
Molecular Weight (calculated)
29524.6 Da
IEP (calculated)
5.162
GRAVY (calculated)
-0.749
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGAGAGGAY VARTAEEVFR DLRGRRAGMI KALTEDVDKF FKLCDPEKEN LCLYGYPNET WEVTLPAEEV PPEIPEPALG INFARDGMNE KDWLALVAVH
101: SDSWLLSVAF YFGARFGFDK ENRRRLFNMI NNLPTIYEVV TGIAKKQSKE KTPNSSSKSS KPSMKVLSRV EPRAKAKVPA PKDEEESGED EGDDEEEEHD
201: NTLCGTCGTN DGKDEFWICC DNCEKWYHGK CVKITPARAE HIKHYRCPEC TNGGSNSNKR VKT
101: SDSWLLSVAF YFGARFGFDK ENRRRLFNMI NNLPTIYEVV TGIAKKQSKE KTPNSSSKSS KPSMKVLSRV EPRAKAKVPA PKDEEESGED EGDDEEEEHD
201: NTLCGTCGTN DGKDEFWICC DNCEKWYHGK CVKITPARAE HIKHYRCPEC TNGGSNSNKR VKT
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.