Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | KXG30618 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | OQU80550 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 98.05 | 97.67 |
| Os01t0887700-01 | Rice | nucleus | 90.62 | 85.29 |
| Zm00001d012196_P005 | Maize | nucleus | 94.14 | 83.97 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 85.94 | 83.65 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 85.55 | 83.27 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 85.16 | 82.89 |
| EES18243 | Sorghum | nucleus | 82.81 | 82.49 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 76.56 | 76.56 |
| CDY17594 | Canola | cytosol | 34.38 | 74.58 |
| EES08261 | Sorghum | nucleus | 73.05 | 73.62 |
| OQU78932 | Sorghum | nucleus | 70.31 | 69.5 |
| EES05274 | Sorghum | nucleus | 69.14 | 69.14 |
| Solyc01g102760.2.1 | Tomato | nucleus | 66.8 | 68.95 |
| PGSC0003DMT400047018 | Potato | nucleus | 66.02 | 68.15 |
| KRH51269 | Soybean | nucleus | 66.8 | 68.13 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 67.19 | 67.98 |
| Solyc01g102750.2.1 | Tomato | nucleus | 66.02 | 67.87 |
| KRH01887 | Soybean | nucleus | 66.8 | 67.86 |
| Bra024817.1-P | Field mustard | nucleus | 64.06 | 66.67 |
| KXG26388 | Sorghum | cytosol | 64.84 | 66.4 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 63.28 | 66.39 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 63.28 | 66.39 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 63.28 | 66.39 |
| CDY03049 | Canola | cytosol | 62.89 | 65.71 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 65.62 | 65.62 |
| CDX84026 | Canola | nucleus | 63.67 | 65.2 |
| AT1G14510.1 | Thale cress | nucleus | 64.06 | 65.08 |
| Bra016698.1-P | Field mustard | cytosol | 63.28 | 64.8 |
| CDX96851 | Canola | cytosol | 63.28 | 64.8 |
| CDX81645 | Canola | cytosol | 61.33 | 64.61 |
| Bra026825.1-P | Field mustard | nucleus | 60.94 | 63.93 |
| CDY53545 | Canola | cytosol | 60.55 | 63.79 |
| CDY17593 | Canola | cytosol | 28.91 | 62.71 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 85.16 | 62.29 |
| Bra026210.1-P | Field mustard | nucleus | 58.98 | 60.4 |
| CDY45267 | Canola | nucleus | 48.05 | 60.29 |
| CDY65375 | Canola | nucleus | 57.42 | 60.25 |
| OQU77499 | Sorghum | nucleus | 57.81 | 58.5 |
| EES00286 | Sorghum | nucleus | 55.08 | 58.26 |
| EER97523 | Sorghum | nucleus | 60.94 | 57.99 |
| OQU88744 | Sorghum | cytosol | 50.78 | 53.72 |
| EER90633 | Sorghum | nucleus | 50.39 | 51.6 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 22.27 | 47.11 |
| OQU77873 | Sorghum | cytosol | 34.77 | 35.74 |
| OQU77871 | Sorghum | cytosol | 15.23 | 34.21 |
| OQU77872 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 28.91 | 33.04 |
| KXG21847 | Sorghum | cytosol, plastid | 32.81 | 28.97 |
| KXG24231 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 30.08 | 28.52 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | UniProt:A0A1B6Q7G5 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | EnsemblPlants:KXG33847 |
| ProteinID:KXG33847 | ProteinID:KXG33847.1 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 | EnsemblPlantsGene:SORBI_3003G382100 | SUPFAM:SSF57903 | UniParc:UPI000220726E |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:-:69537987..69542077
Molecular Weight (calculated)
28689.5 Da
IEP (calculated)
5.506
GRAVY (calculated)
-0.782
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGSGPAP NAARTADEVF RDYKARRAGM IKALTTDVER FFKLCDPEKE NLCLYGYPNE TWEVTLPAEE VPPEIPEPAL GINFARDGMN EKDWLALVAV
101: HSDSWLLSVA FYFGARFGFD REARRRLFSM INNMPTIFEV VTGAVKKQAK EKTPNSSSKS NKPSSKVQSR AESRSKAKVP KDEEESGDDD GDEEAEEHDN
201: TLCGTCGTND GKDQFWICCD NCEKWYHGKC VKITPARAEH IKQYKCPDCT NKRARA
101: HSDSWLLSVA FYFGARFGFD REARRRLFSM INNMPTIFEV VTGAVKKQAK EKTPNSSSKS NKPSSKVQSR AESRSKAKVP KDEEESGDDD GDEEAEEHDN
201: TLCGTCGTND GKDQFWICCD NCEKWYHGKC VKITPARAEH IKQYKCPDCT NKRARA
001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
Arabidopsis Description
AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.