Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | CDY23260 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | CDY36467 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51845 | Canola | cytosol | 44.92 | 75.71 |
| GSMUA_AchrUn_... | Banana | plastid | 61.86 | 57.03 |
| Bra024817.1-P | Field mustard | nucleus | 99.15 | 47.56 |
| CDY03049 | Canola | cytosol | 97.46 | 46.94 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 86.44 | 41.8 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 86.44 | 41.8 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 88.14 | 40.62 |
| CDY45267 | Canola | nucleus | 63.56 | 36.76 |
| CDX84026 | Canola | nucleus | 77.12 | 36.4 |
| CDX81645 | Canola | cytosol | 74.58 | 36.21 |
| CDX96851 | Canola | cytosol | 75.42 | 35.6 |
| KRH51269 | Soybean | nucleus | 75.42 | 35.46 |
| CDY53545 | Canola | cytosol | 72.88 | 35.39 |
| KRH01887 | Soybean | nucleus | 75.42 | 35.32 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 65.25 | 35.16 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 74.58 | 34.78 |
| Solyc01g102760.2.1 | Tomato | nucleus | 72.88 | 34.68 |
| Solyc01g102750.2.1 | Tomato | nucleus | 70.34 | 33.33 |
| PGSC0003DMT400047018 | Potato | nucleus | 69.49 | 33.06 |
| CDY65375 | Canola | nucleus | 66.95 | 32.38 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 66.1 | 30.83 |
| GSMUA_Achr10P... | Banana | nucleus | 66.1 | 30.71 |
| EES08261 | Sorghum | nucleus | 66.1 | 30.71 |
| GSMUA_Achr11P... | Banana | nucleus | 65.25 | 30.56 |
| Os11t0244800-01 | Rice | nucleus | 65.25 | 30.32 |
| Zm00001d038208_P001 | Maize | nucleus | 65.25 | 30.08 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 64.41 | 30.04 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 64.41 | 30.04 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 64.41 | 29.92 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 64.41 | 29.69 |
| EES18243 | Sorghum | nucleus | 64.41 | 29.57 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 66.1 | 29.55 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 63.56 | 29.53 |
| TraesCS4D01G085300.1 | Wheat | peroxisome | 63.56 | 29.53 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 65.25 | 29.39 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 65.25 | 29.28 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 65.25 | 29.28 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 65.25 | 29.28 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 65.25 | 29.28 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 62.71 | 29.25 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 62.71 | 29.13 |
| Os05t0419100-01 | Rice | nucleus | 63.56 | 29.07 |
| KXG33847 | Sorghum | nucleus | 62.71 | 28.91 |
| CDX87061 | Canola | cytosol | 62.71 | 28.79 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 62.71 | 28.79 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 61.86 | 28.4 |
| CDY19781 | Canola | cytosol | 61.86 | 28.4 |
| CDY16540 | Canola | cytosol | 62.71 | 28.24 |
| CDY52629 | Canola | nucleus | 61.86 | 27.97 |
| CDX88221 | Canola | nucleus | 61.86 | 27.97 |
| EES05274 | Sorghum | nucleus | 60.17 | 27.73 |
| CDY70751 | Canola | cytosol | 59.32 | 27.56 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 59.32 | 27.56 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 59.32 | 27.56 |
| Os01t0887700-01 | Rice | nucleus | 62.71 | 27.21 |
| OQU78932 | Sorghum | nucleus | 59.32 | 27.03 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 56.78 | 26.8 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 57.63 | 26.77 |
| Zm00001d041767_P002 | Maize | nucleus | 58.47 | 26.04 |
| Os02t0564100-01 | Rice | nucleus | 57.63 | 25.47 |
| CDX70142 | Canola | cytosol | 51.69 | 25.42 |
| CDX98851 | Canola | nucleus | 51.69 | 25.42 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 60.17 | 25.18 |
| Os04t0444900-01 | Rice | nucleus | 54.24 | 25.0 |
| CDX73886 | Canola | nucleus | 51.69 | 24.9 |
| CDY00726 | Canola | nucleus | 50.85 | 24.49 |
| Zm00001d012196_P005 | Maize | nucleus | 59.32 | 24.39 |
| CDY08544 | Canola | nucleus | 50.85 | 24.29 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 58.47 | 24.04 |
| CDY01002 | Canola | nucleus | 50.85 | 24.0 |
| CDY36305 | Canola | cytosol | 50.0 | 23.6 |
| KXG26388 | Sorghum | cytosol | 49.15 | 23.2 |
| Zm00001d023962_P001 | Maize | nucleus | 57.63 | 22.08 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 65.25 | 22.0 |
| Zm00001d025504_P001 | Maize | nucleus | 44.07 | 20.97 |
| GSMUA_Achr10P... | Banana | nucleus | 37.29 | 16.92 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 38.98 | 15.97 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 36.44 | 15.19 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 36.44 | 15.19 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 36.44 | 15.19 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.12 | 14.61 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.12 | 14.61 |
| Zm00001d025491_P002 | Maize | nucleus | 44.07 | 14.29 |
| Zm00001d010241_P002 | Maize | cytosol | 17.8 | 12.96 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 38.14 | 12.68 |
| CDX80967 | Canola | mitochondrion | 9.32 | 6.08 |
| CDY11330 | Canola | mitochondrion | 8.47 | 5.43 |
| CDY17594 | Canola | cytosol | 0.85 | 0.85 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.85 | 0.83 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:A0A078FZ56 | UniProt:A0A078FZ56 | EnsemblPlants:CDY17593 | ProteinID:CDY17593 |
| ProteinID:CDY17593.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00001796001 | InterPro:IPR013083 |
| InterPro:IPR019787 | PFAM:PF00628 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF60 |
| SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0004EDC00F | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
BnaA06g34120DBnaA06g34120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZ56]
Coordinates
chrLK032076:-:12153..12590
Molecular Weight (calculated)
13081.2 Da
IEP (calculated)
6.096
GRAVY (calculated)
-0.960
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MINDLPTIFE VVTGNAKQSK DHSGTNNNNS KSKPSGLKVS KMMSSPPPKE EDESEDEEEE QGAVCGACGD NYGTDEFWIC CDACEKWFHG RCVKITPAKA
101: EHIKHYKCPS CTNKRARP
101: EHIKHYKCPS CTNKRARP
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.