Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d032143_P001 | |
| Zm00001d051057_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | Zm00001d032143_P001 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | Zm00001d051057_P002 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049007_P001 | Maize | cytosol | 62.96 | 86.44 |
| CDY17594 | Canola | cytosol | 58.02 | 79.66 |
| EES18243 | Sorghum | nucleus | 98.15 | 61.87 |
| Zm00001d038208_P001 | Maize | nucleus | 95.68 | 60.55 |
| Os05t0419100-01 | Rice | nucleus | 91.36 | 57.36 |
| Zm00001d009466_P001 | Maize | cytosol | 33.95 | 56.7 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 90.74 | 56.11 |
| Zm00001d044178_P001 | Maize | cytosol | 32.1 | 55.91 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 90.74 | 55.89 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 90.12 | 55.3 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 85.19 | 53.91 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 82.72 | 52.14 |
| Zm00001d028496_P001 | Maize | cytosol | 32.1 | 51.49 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 67.28 | 49.77 |
| KRH51269 | Soybean | nucleus | 74.69 | 48.21 |
| KRH01887 | Soybean | nucleus | 74.07 | 47.62 |
| Bra024817.1-P | Field mustard | nucleus | 72.22 | 47.56 |
| Zm00001d036294_P001 | Maize | plastid | 37.65 | 47.29 |
| Solyc01g102760.2.1 | Tomato | nucleus | 72.22 | 47.18 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 73.46 | 47.04 |
| PGSC0003DMT400047018 | Potato | nucleus | 71.6 | 46.77 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 70.37 | 46.72 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 70.37 | 46.72 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 70.37 | 46.72 |
| CDY03049 | Canola | cytosol | 70.37 | 46.53 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 73.46 | 46.48 |
| Solyc01g102750.2.1 | Tomato | nucleus | 70.99 | 46.18 |
| Zm00001d012196_P005 | Maize | nucleus | 81.48 | 45.99 |
| AT1G14510.1 | Thale cress | nucleus | 70.99 | 45.63 |
| CDY53545 | Canola | cytosol | 67.28 | 44.86 |
| CDX81645 | Canola | cytosol | 67.28 | 44.86 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 77.78 | 44.68 |
| Bra026825.1-P | Field mustard | nucleus | 67.28 | 44.67 |
| Zm00001d041767_P002 | Maize | nucleus | 72.84 | 44.53 |
| CDX84026 | Canola | nucleus | 67.28 | 43.6 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 77.16 | 43.55 |
| Bra016698.1-P | Field mustard | cytosol | 66.67 | 43.2 |
| CDX96851 | Canola | cytosol | 66.67 | 43.2 |
| CDY65375 | Canola | nucleus | 64.2 | 42.62 |
| Bra026210.1-P | Field mustard | nucleus | 64.2 | 41.6 |
| Zm00001d010834_P001 | Maize | nucleus | 62.35 | 39.92 |
| Zm00001d023962_P001 | Maize | nucleus | 73.46 | 38.64 |
| Zm00001d025504_P001 | Maize | nucleus | 58.02 | 37.9 |
| CDY45267 | Canola | nucleus | 47.53 | 37.75 |
| Zm00001d037537_P001 | Maize | nucleus | 58.64 | 36.82 |
| Zm00001d005185_P001 | Maize | nucleus | 54.32 | 36.51 |
| Zm00001d034627_P002 | Maize | nucleus | 53.7 | 34.8 |
| Zm00001d022110_P002 | Maize | nucleus | 62.35 | 32.06 |
| Zm00001d025491_P002 | Maize | nucleus | 61.11 | 27.2 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 29.01 | 21.46 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 29.01 | 21.46 |
| Zm00001d049006_P001 | Maize | plastid | 16.05 | 19.85 |
| CDY17593 | Canola | cytosol | 12.96 | 17.8 |
Protein Annotations
| MapMan:15.5.8 | UniProt:A0A1D6FQ18 | ProteinID:AQK93721.1 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0042393 | PFAM:PF12165 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | TMHMM:TMhelix | UniParc:UPI000843CCC2 | EnsemblPlantsGene:Zm00001d010241 | EnsemblPlants:Zm00001d010241_P002 |
| EnsemblPlants:Zm00001d010241_T002 | SEG:seg | : | : | : | : |
Description
Alfin-like-transcription factor 11PHD finger protein ALFIN-LIKE 6
Coordinates
chr8:+:105685631..105690609
Molecular Weight (calculated)
18308.6 Da
IEP (calculated)
5.334
GRAVY (calculated)
-0.473
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPGAGAHYS VRTAEEVFRD FRGRRAGMIK ALTNDVEKFY QLCDPEKENL CLYGYPNETW EVTLPAEEVP PEIPEPALGI NFARDGMNEK DWLALVAVHS
101: DSWLLAVAFY FAARFGFDKE ARRRLFNMIN NLPTIFEVVT GVANKQNKEK GPNSTSKSNK TS
101: DSWLLAVAFY FAARFGFDKE ARRRLFNMIN NLPTIFEVVT GVANKQNKEK GPNSTSKSNK TS
001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMVSLM LSFNKIQNIN YELRTNQILY
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMVSLM LSFNKIQNIN YELRTNQILY
Arabidopsis Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.