Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77499 | Sorghum | nucleus | 89.53 | 91.3 |
| Zm00001d010834_P001 | Maize | nucleus | 89.53 | 91.3 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 81.4 | 81.71 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 81.4 | 81.71 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 81.4 | 81.71 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 63.57 | 67.77 |
| Zm00001d049007_P001 | Maize | cytosol | 30.62 | 66.95 |
| GSMUA_Achr10P... | Banana | nucleus | 62.79 | 66.94 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 62.4 | 66.53 |
| VIT_13s0067g01000.t01 | Wine grape | nucleus | 61.63 | 65.98 |
| Solyc09g005360.2.1 | Tomato | nucleus | 61.63 | 65.98 |
| KRH00242 | Soybean | nucleus | 60.85 | 65.69 |
| PGSC0003DMT400059399 | Potato | nucleus | 61.24 | 65.56 |
| KRH49390 | Soybean | nucleus | 60.47 | 65.27 |
| KRH38049 | Soybean | nucleus | 60.08 | 65.13 |
| KRH65724 | Soybean | nucleus | 59.69 | 64.44 |
| PGSC0003DMT400049364 | Potato | nucleus | 58.53 | 62.92 |
| Solyc10g076690.1.1 | Tomato | nucleus | 58.14 | 62.5 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 81.78 | 62.24 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 58.53 | 62.14 |
| PGSC0003DMT400028638 | Potato | nucleus | 56.98 | 61.25 |
| Solyc10g085180.1.1 | Tomato | nucleus | 56.98 | 61.25 |
| CDY00726 | Canola | nucleus | 57.36 | 60.41 |
| CDX73886 | Canola | nucleus | 57.36 | 60.41 |
| AT3G11200.1 | Thale cress | nucleus | 56.59 | 59.35 |
| AT5G05610.1 | Thale cress | nucleus | 55.43 | 59.34 |
| CDY08544 | Canola | nucleus | 56.59 | 59.11 |
| Bra034860.1-P | Field mustard | nucleus | 56.59 | 59.11 |
| Zm00001d010241_P002 | Maize | cytosol | 36.82 | 58.64 |
| Bra034169.1-P | Field mustard | nucleus | 56.59 | 58.4 |
| KRH56367 | Soybean | peroxisome | 49.61 | 58.18 |
| CDY36305 | Canola | cytosol | 56.2 | 58.0 |
| CDY01002 | Canola | nucleus | 56.2 | 58.0 |
| Solyc06g051420.2.1 | Tomato | nucleus | 55.04 | 57.96 |
| Zm00001d005185_P001 | Maize | nucleus | 53.49 | 57.26 |
| CDX70142 | Canola | cytosol | 53.1 | 57.08 |
| Bra009121.1-P | Field mustard | nucleus | 52.71 | 56.67 |
| Zm00001d034627_P002 | Maize | nucleus | 54.26 | 56.0 |
| KRH69940 | Soybean | peroxisome | 47.67 | 55.91 |
| Bra001393.1-P | Field mustard | nucleus | 53.88 | 55.6 |
| CDX98851 | Canola | nucleus | 50.39 | 54.17 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 53.88 | 54.09 |
| Zm00001d038208_P001 | Maize | nucleus | 53.1 | 53.52 |
| Zm00001d041767_P002 | Maize | nucleus | 51.94 | 50.57 |
| Zm00001d044178_P001 | Maize | cytosol | 17.44 | 48.39 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 52.71 | 48.23 |
| Os05t0163100-01 | Rice | nucleus | 48.84 | 47.37 |
| Zm00001d012196_P005 | Maize | nucleus | 52.33 | 47.04 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 51.94 | 46.69 |
| Zm00001d009466_P001 | Maize | cytosol | 17.05 | 45.36 |
| Zm00001d049006_P001 | Maize | plastid | 22.87 | 45.04 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 50.0 | 44.79 |
| Zm00001d023962_P001 | Maize | nucleus | 53.1 | 44.48 |
| Zm00001d025504_P001 | Maize | nucleus | 42.64 | 44.35 |
| Zm00001d028496_P001 | Maize | cytosol | 17.05 | 43.56 |
| Zm00001d036294_P001 | Maize | plastid | 21.32 | 42.64 |
| Zm00001d022110_P002 | Maize | nucleus | 51.55 | 42.22 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.13 | 31.96 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.13 | 31.96 |
| Zm00001d025491_P002 | Maize | nucleus | 44.96 | 31.87 |
Protein Annotations
| EntrezGene:100193399 | MapMan:15.5.8 | Gene3D:3.30.40.10 | UniProt:A0A1D6LYQ7 | ProteinID:AQK84255.1 | InterPro:Alfin |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 |
| InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF37 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0008453D8A | InterPro:Zinc_finger_PHD-type_CS | EnsemblPlantsGene:Zm00001d037537 |
| EnsemblPlants:Zm00001d037537_P001 | EnsemblPlants:Zm00001d037537_T001 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
Alfin-like-transcription factor 1PHD finger protein ALFIN-LIKE 2
Coordinates
chr6:+:128609292..128613832
Molecular Weight (calculated)
28875.6 Da
IEP (calculated)
6.506
GRAVY (calculated)
-0.688
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MDASYRRAGA GSGSAPRSVE DIYKDYRARR SAVLRALTHD VEEFYALCDP EKENLCLYGY ANEAWEVALP AEEVPTELPE PALGINFARD GMNRRDWLAL
101: VAVHSDSWLI SVAFYYAARL NRSDRLYSQG FLRALPLTSQ STKSKVVSGG VKQSKERDRS GTDNSGRNKL SAKQTSEPRL ENNAREPDEG YDEDDGYHSE
201: TLCGTCGGIY SADEFWIGCD VCEKWYHGKC VKITPAKAES IKQYKCPSCC NSKRPRPL
101: VAVHSDSWLI SVAFYYAARL NRSDRLYSQG FLRALPLTSQ STKSKVVSGG VKQSKERDRS GTDNSGRNKL SAKQTSEPRL ENNAREPDEG YDEDDGYHSE
201: TLCGTCGGIY SADEFWIGCD VCEKWYHGKC VKITPAKAES IKQYKCPSCC NSKRPRPL
001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
Arabidopsis Description
AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.