Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0887700-01 | |
| Os02t0564100-01 | |
| Os04t0444900-01 | |
| Os05t0419100-01 | |
| Os11t0244800-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010834_P001 | Maize | nucleus | 50.38 | 52.96 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 51.13 | 52.92 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 51.13 | 52.92 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 51.13 | 52.92 |
| OQU77499 | Sorghum | nucleus | 49.62 | 52.17 |
| Zm00001d037537_P001 | Maize | nucleus | 47.37 | 48.84 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 42.86 | 47.11 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 42.48 | 46.69 |
| GSMUA_Achr10P... | Banana | nucleus | 41.73 | 45.87 |
| VIT_13s0067g01000.t01 | Wine grape | nucleus | 39.47 | 43.57 |
| Solyc09g005360.2.1 | Tomato | nucleus | 38.72 | 42.74 |
| PGSC0003DMT400059399 | Potato | nucleus | 38.35 | 42.32 |
| KRH38049 | Soybean | nucleus | 37.22 | 41.6 |
| KRH00242 | Soybean | nucleus | 37.22 | 41.42 |
| KRH49390 | Soybean | nucleus | 37.22 | 41.42 |
| KRH65724 | Soybean | nucleus | 36.84 | 41.0 |
| PGSC0003DMT400049364 | Potato | nucleus | 36.84 | 40.83 |
| Solyc10g076690.1.1 | Tomato | nucleus | 36.84 | 40.83 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 37.22 | 40.74 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 51.5 | 40.41 |
| AT5G05610.1 | Thale cress | nucleus | 35.34 | 39.0 |
| PGSC0003DMT400028638 | Potato | nucleus | 34.96 | 38.75 |
| Solyc10g085180.1.1 | Tomato | nucleus | 34.59 | 38.33 |
| Os07t0233300-01 | Rice | nucleus | 34.96 | 38.11 |
| AT3G11200.1 | Thale cress | nucleus | 34.96 | 37.8 |
| Os03t0818300-01 | Rice | nucleus | 34.96 | 37.65 |
| CDY08544 | Canola | nucleus | 34.59 | 37.25 |
| Bra034860.1-P | Field mustard | nucleus | 34.59 | 37.25 |
| CDX73886 | Canola | nucleus | 34.21 | 37.14 |
| Bra034169.1-P | Field mustard | nucleus | 34.59 | 36.8 |
| CDY36305 | Canola | cytosol | 34.59 | 36.8 |
| CDY00726 | Canola | nucleus | 33.83 | 36.73 |
| CDY01002 | Canola | nucleus | 34.21 | 36.4 |
| CDX70142 | Canola | cytosol | 32.33 | 35.83 |
| Bra009121.1-P | Field mustard | nucleus | 31.95 | 35.42 |
| KRH56367 | Soybean | peroxisome | 28.95 | 35.0 |
| Bra001393.1-P | Field mustard | nucleus | 32.71 | 34.8 |
| Solyc06g051420.2.1 | Tomato | nucleus | 31.95 | 34.69 |
| CDX98851 | Canola | nucleus | 30.83 | 34.17 |
| Os07t0608400-01 | Rice | nucleus | 35.34 | 33.81 |
| KRH69940 | Soybean | peroxisome | 27.44 | 33.18 |
| Os04t0444900-01 | Rice | nucleus | 31.58 | 32.81 |
| Os11t0244800-01 | Rice | nucleus | 31.2 | 32.68 |
| Os05t0419100-01 | Rice | nucleus | 29.32 | 30.23 |
| Os01t0887700-01 | Rice | nucleus | 30.83 | 30.15 |
| Os02t0564100-01 | Rice | nucleus | 28.95 | 28.84 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 28.2 | 26.04 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 18.8 | 22.83 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 18.8 | 22.83 |
| Os01t0158800-00 | Rice | plastid | 15.41 | 17.23 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | EntrezGene:4337899 | UniProt:A0A0P0WIF4 | InterPro:Alfin | ProteinID:BAS92419.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 |
| InterPro:IPR019787 | EnsemblPlantsGene:Os05g0163100 | EnsemblPlants:Os05t0163100-01 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF37 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000393B150 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Similar to PHD finger protein. (Os05t0163100-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0163100-02)
Coordinates
chr5:-:3697765..3702359
Molecular Weight (calculated)
29158.3 Da
IEP (calculated)
10.768
GRAVY (calculated)
-0.795
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: VLLTSLSPLL RIAITSSSPL LASPRRRSPH PRAASLPWTH PTAATAAEAA AAGAAAVPPL APSRTSSRTS APAAPPSSAP SPTTSRISTR SAIQRRRICA
101: CTGTRTRRGR WRCRRRRCPP SCRSRRSGST SPARLNRNDR KRLFGMMNDL PTVYEVVSGS RQSKERDRSG MDNSSRNKIS SKHTSDVARV ENNIKEEDEG
201: YDEDDGDHSE TLCGTCGGIY SADEFWIGCD VCERWYHGKC VKITPAKAES IKQYKCPSCS SKRPRQ
101: CTGTRTRRGR WRCRRRRCPP SCRSRRSGST SPARLNRNDR KRLFGMMNDL PTVYEVVSGS RQSKERDRSG MDNSSRNKIS SKHTSDVARV ENNIKEEDEG
201: YDEDDGDHSE TLCGTCGGIY SADEFWIGCD VCERWYHGKC VKITPAKAES IKQYKCPSCS SKRPRQ
001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
Arabidopsis Description
AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.