Factsheet for TraesCS1D01G111700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G262200.1
TraesCS1B01G272800.3
TraesCS1D01G262200.1
TraesCS2A01G312700.1
TraesCS2B01G329700.1
TraesCS2D01G311200.1
TraesCS3A01G403600.1
TraesCS3B01G437100.1
TraesCS3D01G398800.2
TraesCS4A01G227900.1
TraesCS4B01G088200.1
TraesCS4D01G085300.1
TraesCSU01G246200.1
TraesCSU01G252500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	TraesCS1A01G262200.1	AT1G14510.1	21798944
AT3G11200.1	TraesCS1B01G272800.3	AT1G14510.1	21798944
AT3G11200.1	TraesCS1D01G262200.1	AT1G14510.1	21798944
AT3G11200.1	TraesCS2A01G312700.1	AT1G14510.1	21798944
AT3G11200.1	TraesCS2B01G329700.1	AT1G14510.1	21798944
AT3G11200.1	TraesCS2D01G311200.1	AT1G14510.1	21798944
AT3G11200.1	TraesCS3A01G403600.1	AT1G14510.1	21798944
AT3G11200.1	TraesCS3B01G437100.1	AT1G14510.1	21798944
AT3G11200.1	TraesCS3D01G398800.2	AT1G14510.1	21798944
AT3G11200.1	TraesCS4A01G227900.1	AT1G14510.1	21798944
AT3G11200.1	TraesCS4B01G088200.1	AT1G14510.1	21798944
AT3G11200.1	TraesCS4D01G085300.1	AT1G14510.1	21798944
AT3G11200.1	TraesCSU01G246200.1	AT1G14510.1	21798944
AT3G11200.1	TraesCSU01G252500.1	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G129400.1	Wheat	nucleus	100.0	100.0
TraesCS1A01G110200.1	Wheat	nucleus	99.61	99.61
Zm00001d010834_P001	Maize	nucleus	85.21	86.56
OQU77499	Sorghum	nucleus	84.05	85.38
Zm00001d037537_P001	Maize	nucleus	81.71	81.4
HORVU1Hr1G024210.1	Barley	nucleus	99.22	75.22
GSMUA_Achr7P15530_001	Banana	nucleus	68.48	72.73
GSMUA_Achr10P...	Banana	nucleus	67.32	71.49
GSMUA_Achr2P18960_001	Banana	nucleus	66.15	70.25
VIT_13s0067g01000.t01	Wine grape	nucleus	63.42	67.63
KRH38049	Soybean	nucleus	62.26	67.23
KRH65724	Soybean	nucleus	61.87	66.53
KRH00242	Soybean	nucleus	61.87	66.53
KRH49390	Soybean	nucleus	61.48	66.11
Solyc09g005360.2.1	Tomato	nucleus	61.87	65.98
PGSC0003DMT400059399	Potato	nucleus	61.48	65.56
VIT_08s0105g00360.t01	Wine grape	nucleus	61.87	65.43
Solyc10g076690.1.1	Tomato	nucleus	60.31	64.58
PGSC0003DMT400049364	Potato	nucleus	59.92	64.17
PGSC0003DMT400028638	Potato	nucleus	59.92	64.17
Solyc10g085180.1.1	Tomato	nucleus	59.53	63.75
AT3G11200.1	Thale cress	nucleus	59.92	62.6
CDX73886	Canola	nucleus	59.53	62.45
CDY00726	Canola	nucleus	59.14	62.04
CDY08544	Canola	nucleus	58.75	61.13
Bra034860.1-P	Field mustard	nucleus	58.75	61.13
AT5G05610.1	Thale cress	nucleus	57.2	61.0
Bra034169.1-P	Field mustard	nucleus	59.14	60.8
CDY36305	Canola	cytosol	58.75	60.4
CDY01002	Canola	nucleus	58.75	60.4
TraesCS5D01G486400.2	Wheat	nucleus	58.37	59.76
KRH56367	Soybean	peroxisome	50.97	59.55
CDX70142	Canola	cytosol	55.25	59.17
Solyc06g051420.2.1	Tomato	nucleus	56.03	58.78
Bra009121.1-P	Field mustard	nucleus	54.86	58.75
TraesCS4D01G085300.1	Wheat	peroxisome	57.2	57.87
KRH69940	Soybean	peroxisome	49.42	57.73
Bra001393.1-P	Field mustard	nucleus	56.03	57.6
CDX98851	Canola	nucleus	53.31	57.08
TraesCS1D01G262200.1	Wheat	peroxisome	55.64	54.58
TraesCS2D01G179400.2	Wheat	nucleus	57.2	53.85
TraesCS3D01G398800.2	Wheat	cytosol	54.09	52.85
Os05t0163100-01	Rice	nucleus	52.92	51.13
CDY36322	Canola	cytosol, plasma membrane, plastid	52.53	46.88
TraesCS2D01G311200.1	Wheat	nucleus	39.69	36.04
TraesCS7D01G093600.1	Wheat	plastid	35.41	31.16
TraesCS7D01G093700.1	Wheat	plastid	35.02	29.61

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042393	InterPro:IPR013083	InterPro:IPR019787	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF37	SMART:SM00249	SUPFAM:SSF57903	EnsemblPlantsGene:TraesCS1D01G111700
EnsemblPlants:TraesCS1D01G111700.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
TIGR:cd15613	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:107172158..107176560

Molecular Weight (calculated)

28782.5 Da

IEP (calculated)

5.702

GRAVY (calculated)

-0.749

Length

257 amino acids

Sequence
(BLAST)

001: MDASYRRSGA GGGGGSAPRT VEDIFKDYRA RRNAIHRALT HDVEEFYAQC DPEKENLCLY GYANEAWEVA LPAEEVPTEL PEPALGINFA RDGMKRSDWL
101: ALVAVHSDSW LVSVAFYYAA RLTRNDRKRL FGMMNDLPTV YEVISGMRQS KERDRSGGID NSGRNKLPSK HTVEAPPPPR AENNARDADE GYDEDDGDHS
201: ETLCGTCGGI YSAEEFWIGC DVCERWYHGK CVKITPAKAE SIKQYKCPSC SSKRPRQ

Best Arabidopsis Sequence Match ( AT3G11200.1 )
(BLAST)

001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ

Arabidopsis Description

AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.