Factsheet for TraesCS7D01G093700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G093600.1	Wheat	plastid	94.08	97.95
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	66.78	92.69
TraesCS4A01G397400.1	Wheat	cytosol, nucleus, plastid	66.78	92.69
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	66.45	92.24
TraesCS7A01G097400.1	Wheat	cytosol	66.45	92.24
TraesCS4A01G397500.1	Wheat	cytosol	64.47	89.5
HORVU7Hr1G021380.1	Barley	plastid	45.07	69.9
HORVU0Hr1G025310.1	Barley	plastid	34.87	63.47
TraesCS5D01G486400.2	Wheat	nucleus	33.88	41.04
TraesCS1D01G262200.1	Wheat	peroxisome	31.91	37.02
OQU77873	Sorghum	cytosol	28.95	35.34
TraesCS4D01G085300.1	Wheat	peroxisome	29.28	35.04
TraesCS1D01G111700.1	Wheat	nucleus	29.61	35.02
TraesCS3D01G398800.2	Wheat	cytosol	29.93	34.6
OQU77871	Sorghum	cytosol	12.83	34.21
GSMUA_Achr10P...	Banana	nucleus	6.25	33.93
OQU77872	Sorghum	cytosol, mitochondrion, nucleus, plastid	23.68	32.14
TraesCS2D01G179400.2	Wheat	nucleus	28.62	31.87
KXG24231	Sorghum	cytosol, mitochondrion, nucleus, plastid	25.99	29.26
KXG21847	Sorghum	cytosol, plastid	26.97	28.28
TraesCS2D01G311200.1	Wheat	nucleus	23.03	24.73

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042393	InterPro:IPR013083	InterPro:IPR019787	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF65	SMART:SM00249	SUPFAM:SSF57903	EnsemblPlantsGene:TraesCS7D01G093700
EnsemblPlants:TraesCS7D01G093700.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
TIGR:cd15613	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:56068754..56072457

Molecular Weight (calculated)

34594.1 Da

IEP (calculated)

4.985

GRAVY (calculated)

-0.695

Length

304 amino acids

Sequence
(BLAST)

001: MDASRARSSS NPTPTRRRLT VPVHGRPSPT PLPAHPGEWR SRPAVSWTVE NIYEDFSGRR SALVQALTTE QDTLYDLLRE EGKEPMCLYG YPDGSWELTL
101: PEEMVPPGLP VPTRGINRRQ DYVNRSDYLT LVAHHSDSWL MGVTFFLSTH LDANQRIHLF NMVNEMRTVH DEFYLSYGLP WLSTFARYNA NRESSAPTQE
201: NVSNPDVDSI TPAEENVPPS QDSMHVLSAQ NRDSRKPAED KQKDNEVTDF CGSCNAPYHA NAFWICCDEC DQWFHGKCVN VTASEAEHIK EYKCPDCIRE
301: VIGE

Best Arabidopsis Sequence Match ( AT2G02470.1 )
(BLAST)

001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP

Arabidopsis Description

AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.