Factsheet for TraesCS4A01G397400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	100.0	100.0
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	99.54	99.54
TraesCS4A01G397500.1	Wheat	cytosol	96.8	96.8
TraesCS7A01G097400.1	Wheat	cytosol	89.95	89.95
TraesCS7D01G093600.1	Wheat	plastid	92.24	69.18
TraesCS7D01G093700.1	Wheat	plastid	92.69	66.78
HORVU7Hr1G021380.1	Barley	plastid	35.62	39.8
TraesCS1A01G262200.1	Wheat	peroxisome	34.7	34.7
GSMUA_Achr10P...	Banana	nucleus	8.22	32.14
HORVU0Hr1G025310.1	Barley	plastid	24.2	31.74
OQU77871	Sorghum	cytosol	15.98	30.7
OQU77872	Sorghum	cytosol, mitochondrion, nucleus, plastid	31.05	30.36
TraesCS1A01G110200.1	Wheat	nucleus	34.7	29.57
TraesCS4A01G227900.1	Wheat	peroxisome	33.79	29.13
TraesCS3A01G403600.1	Wheat	cytosol	34.25	28.52
OQU77873	Sorghum	cytosol	31.96	28.11
TraesCS2A01G172100.2	Wheat	nucleus	33.33	26.74
KXG24231	Sorghum	cytosol, mitochondrion, nucleus, plastid	28.77	23.33
KXG21847	Sorghum	cytosol, plastid	29.22	22.07
TraesCS2A01G312700.1	Wheat	nucleus	28.31	21.91

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042393	InterPro:IPR013083	InterPro:IPR019787	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF65	SMART:SM00249	SUPFAM:SSF57903	EnsemblPlantsGene:TraesCS4A01G397400
EnsemblPlants:TraesCS4A01G397400.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD

Description

No Description!

Coordinates

chr4A:-:672633200..672634270

Molecular Weight (calculated)

24945.1 Da

IEP (calculated)

4.948

GRAVY (calculated)

-0.537

Length

219 amino acids

Sequence
(BLAST)

001: MCLYGYPDGS WELTLPEEMV PPGLPVPTRG INRRRDYVNR SDYLTLVAHH SDSWLMGVTF FLSTHLDANQ RIRLFDMVNE MRTVHDEFYL SYGLSWLSTF
101: ARYNANRESS ALTQENVSNP DVVSITHAEE NVPPAQDSMQ VLSAPNRDSR KPAKDKQKDN EVTDFCGSCN APYHANAFWI GCDGCDQWFH GKCVNITASE
201: AKHIEEYKCP DCIREVIGE

Best Arabidopsis Sequence Match ( AT3G11200.2 )
(BLAST)

001: MRSGYERFRL LDTLLCVLLR FDFNFWVFVV IEKENLCLYG HPNESWEVNL PAEEVPPELP EPALGINFAR DGMQRKDWLS LVAVHSDCWL LSVSFYFGAR
101: LNRNERKRLF SLINDLPTLF DVVTGRKAMK DNKPSSDSGS KSRNGTKRSI DGQTKSSTPK LMEESYEEEE EEDEHGDTLC GSCGGHYTNE EFWICCDVCE
201: RWYHGKCVKI TPAKAESIKQ YKCPPCCAKK GRQ

Arabidopsis Description

AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.