CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24231	Sorghum	cytosol, mitochondrion, nucleus, plastid	40.34	43.33
OQU77873	Sorghum	cytosol	34.14	39.76
EER90633	Sorghum	nucleus	34.14	39.6
OQU88744	Sorghum	cytosol	31.72	38.02
EES08261	Sorghum	nucleus	31.72	36.22
EES00286	Sorghum	nucleus	30.0	35.95
GSMUA_Achr10P...	Banana	nucleus	6.9	35.71
EES18243	Sorghum	nucleus	31.03	35.02
EES05274	Sorghum	nucleus	30.69	34.77
OQU77499	Sorghum	nucleus	29.66	33.99
OQU88643	Sorghum	extracellular, golgi, mitochondrion	14.14	33.88
OQU78932	Sorghum	nucleus	29.66	33.2
EER97523	Sorghum	nucleus	30.69	33.09
KXG33847	Sorghum	nucleus	28.97	32.81
OQU77871	Sorghum	cytosol	12.76	32.46
KXG26388	Sorghum	cytosol	27.93	32.4
OQU77872	Sorghum	cytosol, mitochondrion, nucleus, plastid	24.48	31.7
HORVU0Hr1G025310.1	Barley	plastid	16.9	29.34
TraesCS4A01G397400.1	Wheat	cytosol, nucleus, plastid	22.07	29.22
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	22.07	29.22
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	22.07	29.22
TraesCS7A01G097400.1	Wheat	cytosol	21.38	28.31
TraesCS7D01G093600.1	Wheat	plastid	28.28	28.08
HORVU7Hr1G021380.1	Barley	plastid	18.97	28.06
TraesCS4A01G397500.1	Wheat	cytosol	21.03	27.85
TraesCS7D01G093700.1	Wheat	plastid	28.28	26.97

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	UniProt:A0A1B6P7X6	InterPro:Alfin	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787
EnsemblPlants:KXG21847	ProteinID:KXG21847	ProteinID:KXG21847.1	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF39	SMART:SM00249	EnsemblPlantsGene:SORBI_3009G116200	SUPFAM:SSF57903
UniParc:UPI00081AE41E	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:45865623..45869040

Molecular Weight (calculated)

32323.7 Da

IEP (calculated)

7.553

GRAVY (calculated)

-0.371

Length

290 amino acids

Sequence
(BLAST)

001: MDSPPPLLAS SPRSALPDHP LHGQATGSPP PPLLTSAPCS PLPAEPLLHG KATGAPAAAA FCPPSYTAEW IFRDFACRRA ALVRALTSDE KAFSRKCNQG
101: TSETLYLYGN SDVSWEVRPQ KFMPLGQPEP MMLGIKLVRG NMKRIKWLRH IAMHCDAWLI RISSFLGANL ETRSRQRLSD RMNSLQTVLE TLIASDTYQR
201: ICRVEKANED EDEGCGTEPT ICASCGSGYH ANGFWICCDV CDRWFHGKCV RITAAQAERI EHYECPECCS DKKGHDYNVD PMLSVLYKRY

Best Arabidopsis Sequence Match ( AT5G05610.1 )
(BLAST)

001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q

Arabidopsis Description

AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.