Factsheet for TraesCS7D01G093600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G093700.1	Wheat	plastid	97.95	94.08
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	69.18	92.24
TraesCS4A01G397400.1	Wheat	cytosol, nucleus, plastid	69.18	92.24
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	68.84	91.78
TraesCS7A01G097400.1	Wheat	cytosol	68.84	91.78
TraesCS4A01G397500.1	Wheat	cytosol	66.78	89.04
HORVU7Hr1G021380.1	Barley	plastid	43.84	65.31
HORVU0Hr1G025310.1	Barley	plastid	35.96	62.87
TraesCS5D01G486400.2	Wheat	nucleus	34.25	39.84
OQU77873	Sorghum	cytosol	30.48	35.74
TraesCS1D01G262200.1	Wheat	peroxisome	31.85	35.5
TraesCS1D01G111700.1	Wheat	nucleus	31.16	35.41
TraesCS4D01G085300.1	Wheat	peroxisome	30.14	34.65
OQU77871	Sorghum	cytosol	13.36	34.21
GSMUA_Achr10P...	Banana	nucleus	6.51	33.93
TraesCS3D01G398800.2	Wheat	cytosol	30.48	33.84
OQU77872	Sorghum	cytosol, mitochondrion, nucleus, plastid	24.66	32.14
TraesCS2D01G179400.2	Wheat	nucleus	29.45	31.5
KXG24231	Sorghum	cytosol, mitochondrion, nucleus, plastid	26.71	28.89
KXG21847	Sorghum	cytosol, plastid	28.08	28.28
TraesCS2D01G311200.1	Wheat	nucleus	23.29	24.03

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042393	InterPro:IPR013083	InterPro:IPR019787	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF65	SMART:SM00249	SUPFAM:SSF57903	EnsemblPlantsGene:TraesCS7D01G093600
EnsemblPlants:TraesCS7D01G093600.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
TIGR:cd15613	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:56052942..56056820

Molecular Weight (calculated)

32981.3 Da

IEP (calculated)

5.724

GRAVY (calculated)

-0.645

Length

292 amino acids

Sequence
(BLAST)

001: MDASRAGSPS NPTPTRHRLT VPVHGRPSPT PLPAHPGEWR SRPAVSWTVE NIYEDFSGRR SALVQALTTG KEPMCLYGYA DGSWQLTLPE EMVPPGLPVP
101: TRGINRRRDY VNRSDYLTLV AHHSDSWLMG VTFFLSTHLD ANQRIHLFNM VNEMRTVHDE FYLSYGLPWL STFARYNANR ESSAPTQENV SNPDVDSITP
201: AEENVPPSQD SMHVLSAQNR DSRKPAEDKQ KDNEVTDFCG SCNAPYHANA FWICCDECDQ WFHGKCVNVT ASEAEHIKEY KCPDCIREVI GE

Best Arabidopsis Sequence Match ( AT3G42790.1 )
(BLAST)

001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA

Arabidopsis Description

AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.