CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05274
EES08261
EES18243
KXG26388
KXG33847
OQU78932

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	EES05274	AT1G14510.1	21798944
AT3G11200.1	EES08261	AT1G14510.1	21798944
AT3G11200.1	EES18243	AT1G14510.1	21798944
AT3G11200.1	KXG26388	AT1G14510.1	21798944
AT3G11200.1	KXG33847	AT1G14510.1	21798944
AT3G11200.1	OQU78932	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034627_P002	Maize	nucleus	96.0	96.0
Os03t0818300-01	Rice	nucleus	77.2	78.14
TraesCS5D01G486400.2	Wheat	nucleus	75.6	75.3
TraesCS5B01G486600.1	Wheat	nucleus	75.6	75.3
OQU88744	Sorghum	cytosol	72.4	74.79
VIT_08s0105g00360.t01	Wine grape	nucleus	67.2	69.14
KRH65724	Soybean	nucleus	66.0	69.04
KRH49390	Soybean	nucleus	65.6	68.62
KRH38049	Soybean	nucleus	65.2	68.49
VIT_13s0067g01000.t01	Wine grape	nucleus	66.0	68.46
GSMUA_Achr10P...	Banana	nucleus	66.0	68.18
GSMUA_Achr2P18960_001	Banana	nucleus	66.0	68.18
KRH00242	Soybean	nucleus	64.8	67.78
GSMUA_Achr7P15530_001	Banana	nucleus	65.6	67.77
PGSC0003DMT400059399	Potato	nucleus	65.2	67.63
Solyc09g005360.2.1	Tomato	nucleus	64.8	67.22
PGSC0003DMT400049364	Potato	nucleus	64.4	67.08
Solyc10g076690.1.1	Tomato	nucleus	64.4	67.08
PGSC0003DMT400028638	Potato	nucleus	63.6	66.25
AT5G05610.1	Thale cress	nucleus	63.2	65.56
Solyc10g085180.1.1	Tomato	nucleus	62.4	65.0
AT3G11200.1	Thale cress	nucleus	63.6	64.63
HORVU5Hr1G112420.6	Barley	nucleus	70.4	64.0
CDX73886	Canola	nucleus	62.0	63.27
CDY36305	Canola	cytosol	62.8	62.8
CDY00726	Canola	nucleus	61.2	62.45
CDY08544	Canola	nucleus	61.6	62.35
Bra034860.1-P	Field mustard	nucleus	61.6	62.35
Bra034169.1-P	Field mustard	nucleus	62.0	62.0
KRH56367	Soybean	peroxisome	54.0	61.36
CDY01002	Canola	nucleus	61.2	61.2
CDX70142	Canola	cytosol	58.4	60.83
CDX98851	Canola	nucleus	58.4	60.83
Bra009121.1-P	Field mustard	nucleus	58.0	60.42
EES00286	Sorghum	nucleus	58.4	60.33
Solyc06g051420.2.1	Tomato	nucleus	58.4	59.59
KRH69940	Soybean	peroxisome	52.4	59.55
OQU77499	Sorghum	nucleus	59.2	58.5
Bra001393.1-P	Field mustard	nucleus	58.0	58.0
OQU88643	Sorghum	extracellular, golgi, mitochondrion	26.8	55.37
KXG26388	Sorghum	cytosol	54.4	54.4
EES05274	Sorghum	nucleus	55.6	54.3
EES08261	Sorghum	nucleus	54.0	53.15
EER97523	Sorghum	nucleus	55.2	51.3
EES18243	Sorghum	nucleus	52.4	50.97
OQU78932	Sorghum	nucleus	52.8	50.97
KXG33847	Sorghum	nucleus	51.6	50.39
CDY36322	Canola	cytosol, plasma membrane, plastid	56.8	49.31
HORVU5Hr1G059130.2	Barley	nucleus	26.8	44.67
OQU77873	Sorghum	cytosol	37.2	37.35
KXG21847	Sorghum	cytosol, plastid	39.6	34.14
OQU77872	Sorghum	cytosol, mitochondrion, nucleus, plastid	30.0	33.48
KXG24231	Sorghum	cytosol, mitochondrion, nucleus, plastid	30.4	28.15
OQU77871	Sorghum	cytosol	12.8	28.07

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	EntrezGene:8057052	InterPro:Alfin	UniProt:C5WV33	EnsemblPlants:EER90633
ProteinID:EER90633	ProteinID:EER90633.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042393
GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF96	SMART:SM00249	EnsemblPlantsGene:SORBI_3001G037000	SUPFAM:SSF57903
unigene:Sbi.4176	UniParc:UPI0001A81F9A	RefSeq:XP_002463635.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:2747323..2751063

Molecular Weight (calculated)

27952.3 Da

IEP (calculated)

5.595

GRAVY (calculated)

-0.688

Length

250 amino acids

Sequence
(BLAST)

001: MDMAPAPVSS NPRSVEDIFK DFSGRRAGLV RALTSDVDDF CSFCDPDKEN LCLYGLPNGT WEVSPPADEV PPELPEPALG INFARDGMQR RDWLSLVAVH
101: SDSWLISVAF FYGARLNAND RKRLFSLISD HPSVFEAFAD RKHGRDRSGV DSSGKSRHSS KRANDGHAKN SRAAAPAAKD YDDDDDEEDE EHTETFCGSC
201: GGLYNANEFW IGCDICERWF HGKCVRITPA KAEHIKHYKC PDCSSKKMRQ

Best Arabidopsis Sequence Match ( AT3G11200.1 )
(BLAST)

001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ

Arabidopsis Description

AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.