CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01887
KRH51269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	KRH01887	AT1G14510.1	21798944
AT3G11200.1	KRH51269	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65724	Soybean	nucleus	98.74	98.33
KRH49390	Soybean	nucleus	92.02	91.63
KRH00242	Soybean	nucleus	92.02	91.63
VIT_08s0105g00360.t01	Wine grape	nucleus	87.82	86.01
PGSC0003DMT400059399	Potato	nucleus	84.87	83.82
PGSC0003DMT400049364	Potato	nucleus	82.35	81.67
GSMUA_Achr7P15530_001	Banana	nucleus	80.67	79.34
GSMUA_Achr10P...	Banana	nucleus	79.83	78.51
PGSC0003DMT400028638	Potato	nucleus	77.73	77.08
GSMUA_Achr2P18960_001	Banana	nucleus	78.15	76.86
KRH56367	Soybean	peroxisome	70.59	76.36
AT5G05610.1	Thale cress	nucleus	77.31	76.35
AT3G11200.1	Thale cress	nucleus	77.73	75.2
CDX73886	Canola	nucleus	76.89	74.69
CDY00726	Canola	nucleus	76.89	74.69
KRH69940	Soybean	peroxisome	68.91	74.55
Bra034169.1-P	Field mustard	nucleus	78.15	74.4
CDY36305	Canola	cytosol	77.73	74.0
CDY08544	Canola	nucleus	76.47	73.68
Bra034860.1-P	Field mustard	nucleus	76.47	73.68
CDY01002	Canola	nucleus	76.89	73.2
Os07t0233300-01	Rice	nucleus	73.11	71.31
CDX70142	Canola	cytosol	71.01	70.42
Bra009121.1-P	Field mustard	nucleus	70.59	70.0
CDX98851	Canola	nucleus	70.59	70.0
Os03t0818300-01	Rice	nucleus	72.27	69.64
Solyc06g051420.2.1	Tomato	nucleus	70.59	68.57
OQU88744	Sorghum	cytosol	68.91	67.77
HORVU2Hr1G052960.2	Barley	cytosol	69.75	67.48
Bra001393.1-P	Field mustard	nucleus	70.59	67.2
KRH62601	Soybean	cytosol	43.28	66.45
EES00286	Sorghum	nucleus	67.23	66.12
OQU77499	Sorghum	nucleus	69.75	65.61
Zm00001d005185_P001	Maize	nucleus	66.39	65.56
EER90633	Sorghum	nucleus	68.49	65.2
Zm00001d010834_P001	Maize	nucleus	68.91	64.82
Zm00001d034627_P002	Maize	nucleus	68.07	64.8
TraesCS5B01G486600.1	Wheat	nucleus	68.07	64.54
TraesCS5D01G486400.2	Wheat	nucleus	67.65	64.14
KRH37475	Soybean	nucleus	66.39	63.71
KRH51269	Soybean	nucleus	66.81	63.35
KRH01887	Soybean	nucleus	66.81	63.1
KRH23260	Soybean	nucleus	65.13	63.01
KRH19253	Soybean	nucleus	65.97	62.55
TraesCS1A01G110200.1	Wheat	nucleus	67.23	62.26
TraesCS1B01G129400.1	Wheat	nucleus	67.23	62.26
TraesCS1D01G111700.1	Wheat	nucleus	67.23	62.26
KRH02655	Soybean	nucleus	65.55	61.9
KRH10063	Soybean	nucleus	64.29	61.69
KRH47546	Soybean	nucleus	65.55	61.66
KRH06119	Soybean	nucleus	65.13	61.26
KRH71913	Soybean	cytosol	24.37	61.05
KRH15616	Soybean	nucleus	65.55	60.94
Zm00001d037537_P001	Maize	nucleus	65.13	60.08
CDY36322	Canola	cytosol, plasma membrane, plastid	71.85	59.38
KRH26115	Soybean	endoplasmic reticulum, extracellular	20.17	54.55
HORVU5Hr1G112420.6	Barley	nucleus	62.6	54.18
OQU88643	Sorghum	extracellular, golgi, mitochondrion	27.31	53.72
KRH05401	Soybean	endoplasmic reticulum, nucleus, plastid	54.2	52.02
KRH61563	Soybean	cytosol	45.38	49.09
HORVU1Hr1G024210.1	Barley	nucleus	67.23	47.2
Os05t0163100-01	Rice	nucleus	41.6	37.22
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	32.77	35.62
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	32.77	35.62
HORVU5Hr1G059130.2	Barley	nucleus	21.43	34.0

Protein Annotations

EntrezGene:100793126	MapMan:15.5.8	Gene3D:3.30.40.10	EMBL:ACUP02005590	InterPro:Alfin	EMBL:BT093565
UniProt:C6T7X8	EnsemblPlantsGene:GLYMA_09G107000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042393
GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:KRH38049	ProteinID:KRH38049	ProteinID:KRH38049.1
PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF96
SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI0001B15D86	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:20072892..20076438

Molecular Weight (calculated)

26964.6 Da

IEP (calculated)

5.252

GRAVY (calculated)

-0.674

Length

238 amino acids

Sequence
(BLAST)

001: MEMTSTPRTV EEIFKDYTAR RTAIVRALSQ DVDEFYGLCD PDKENLCLYG HPNETWEVTL PAEEVPPELP EPALGINFAR DGMNRRDWLS LVAVHSDSWL
101: LSVAFYLGAR LNRNERKRLF SLINDLPTVF EVVTERKPVK DKPTADSGSK SRGSTKRSSD GQVKSNPKFA DEGYEEEDEH SETLCGSCGG NYNADEFWIG
201: CDICERWFHG KCVKITPAKA ESIKQYKCPS CSLRRGRP

Best Arabidopsis Sequence Match ( AT5G05610.1 )
(BLAST)

001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q

Arabidopsis Description

AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.