CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10063	Soybean	nucleus	93.09	92.34
KRH26115	Soybean	endoplasmic reticulum, extracellular	32.11	89.77
KRH06119	Soybean	nucleus	87.4	84.98
KRH47546	Soybean	nucleus	86.59	84.19
Zm00001d049007_P001	Maize	cytosol	38.62	80.51
KRH15616	Soybean	nucleus	81.71	78.52
KRH19253	Soybean	nucleus	80.08	78.49
KRH37475	Soybean	nucleus	78.86	78.23
VIT_09s0002g01600.t01	Wine grape	nucleus	82.93	78.16
VIT_04s0008g01670.t01	Wine grape	nucleus	83.74	78.03
KRH02655	Soybean	nucleus	79.27	77.38
Solyc07g041190.2.1	Tomato	nucleus	76.02	76.02
Solyc05g032770.2.1	Tomato	nucleus	52.85	75.58
PGSC0003DMT400054001	Potato	nucleus	75.61	75.3
KRH01887	Soybean	nucleus	75.61	73.81
KRH51269	Soybean	nucleus	75.2	73.71
KRH71913	Soybean	cytosol	27.64	71.58
KRH05401	Soybean	endoplasmic reticulum, nucleus, plastid	67.89	67.34
KRH38049	Soybean	nucleus	63.01	65.13
KRH49390	Soybean	nucleus	63.01	64.85
KRH00242	Soybean	nucleus	62.6	64.44
KRH65724	Soybean	nucleus	62.2	64.02
Zm00001d049006_P001	Maize	plastid	33.33	62.6
KRH61563	Soybean	cytosol	52.03	58.18
KRH69940	Soybean	peroxisome	51.22	57.27
KRH56367	Soybean	peroxisome	51.22	57.27
KRH62601	Soybean	cytosol	32.52	51.61
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	30.49	34.25
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	30.49	34.25

Protein Annotations

EntrezGene:100170696	MapMan:15.5.8	Gene3D:3.30.40.10	EMBL:ACUP02008458	InterPro:Alfin	EMBL:BT089957
EMBL:DQ973808	EnsemblPlantsGene:GLYMA_13G347000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042393
GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:KRH23260	ProteinID:KRH23260	ProteinID:KRH23260.1
PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	UniProt:Q06A77	SMART:SM00249
SUPFAM:SSF57903	UniParc:UPI0000E443DD	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:43725944..43734950

Molecular Weight (calculated)

27915.6 Da

IEP (calculated)

4.819

GRAVY (calculated)

-0.700

Length

246 amino acids

Sequence
(BLAST)

001: MEALSRSVED VFEDFKGRRA GIIKALTTDV EDFYSQCDPE KENLCLYGSP NEQWEVNLPV EEVPPELPEP VLGINFARDG MQEKDWLSLV AVHSDTWLLA
101: LAFYFGARFG FDKTHRNRLF SMINELPTIF EVVTAKKQVK EKSSVSNNSG SKSKSNSKAR ASETQGRQSK PLQPKDEDEG LEEEDNDEHG DTLCGACSEN
201: YGTDEFWICC DICEKWFHGK CVKITPARAE HIKQYKCPSC SNKRAR

Best Arabidopsis Sequence Match ( AT1G14510.1 )
(BLAST)

001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA

Arabidopsis Description

AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.