CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71913	Soybean	cytosol	32.81	88.42
KRH19253	Soybean	nucleus	85.16	86.85
KRH37475	Soybean	nucleus	83.59	86.29
KRH06119	Soybean	nucleus	84.77	85.77
KRH47546	Soybean	nucleus	84.77	85.77
KRH02655	Soybean	nucleus	83.98	85.32
Solyc12g096040.1.1	Tomato	nucleus	83.59	84.25
Zm00001d049007_P001	Maize	cytosol	38.67	83.9
KRH05401	Soybean	endoplasmic reticulum, nucleus, plastid	80.86	83.47
KRH23260	Soybean	nucleus	78.52	81.71
KRH10063	Soybean	nucleus	78.91	81.45
KRH26115	Soybean	endoplasmic reticulum, extracellular	26.56	77.27
KRH01887	Soybean	nucleus	73.05	74.21
KRH51269	Soybean	nucleus	72.66	74.1
KRH00242	Soybean	nucleus	61.72	66.11
KRH49390	Soybean	nucleus	61.33	65.69
KRH38049	Soybean	nucleus	60.94	65.55
KRH61563	Soybean	cytosol	56.25	65.45
KRH65724	Soybean	nucleus	60.94	65.27
Zm00001d049006_P001	Maize	plastid	32.03	62.6
KRH56367	Soybean	peroxisome	50.0	58.18
KRH69940	Soybean	peroxisome	49.22	57.27
KRH62601	Soybean	cytosol	31.64	52.26
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	28.91	33.79
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	28.91	33.79

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	EMBL:ACUP02008622	InterPro:Alfin	EnsemblPlantsGene:GLYMA_14G099700	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	UniProt:I1M961	InterPro:IPR013083
InterPro:IPR019787	EnsemblPlants:KRH15616	ProteinID:KRH15616	ProteinID:KRH15616.1	PFAM:PF00628	PFAM:PF12165
ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF65	SMART:SM00249	SUPFAM:SSF57903
UniParc:UPI00023D420A	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:9714389..9719658

Molecular Weight (calculated)

28790.7 Da

IEP (calculated)

4.841

GRAVY (calculated)

-0.657

Length

256 amino acids

Sequence
(BLAST)

001: MEAGYNPRTV EEVFRDFKGR RAALIKALTT DVEEFYQQCD PEKENLCLYG FPSEQWEVNL PAEEVPPELP EPALGINFAR DGMQEKDWLS LVAVHSDAWL
101: LAVAFYFGAR FGFDKADRKR LFNMINDLPT IFEVVTGMAK KQGKEKSSVS NHSSTKSKSN SKRGSESKYT KAMQSKDEDD EGGAGLGLGL EDEDEEEHGD
201: TLCGACGESY AADEFWICCD ICEKWFHGKC VKITPARAEH IKQYKCPSCS NKRARP

Best Arabidopsis Sequence Match ( AT5G20510.1 )
(BLAST)

001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP

Arabidopsis Description

AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.