CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19253	Soybean	nucleus	96.83	97.21
VIT_11s0016g01500.t01	Wine grape	nucleus	89.29	89.29
KRH37475	Soybean	nucleus	87.7	89.11
KRH15616	Soybean	nucleus	85.32	83.98
KRH06119	Soybean	nucleus	83.73	83.4
KRH47546	Soybean	nucleus	83.33	83.0
KRH23260	Soybean	nucleus	77.38	79.27
KRH71913	Soybean	cytosol	29.76	78.95
KRH10063	Soybean	nucleus	77.38	78.63
KRH26115	Soybean	endoplasmic reticulum, extracellular	25.79	73.86
KRH05401	Soybean	endoplasmic reticulum, nucleus, plastid	71.83	72.98
KRH51269	Soybean	nucleus	72.62	72.91
KRH01887	Soybean	nucleus	72.62	72.62
Os07t0608400-01	Rice	nucleus	77.38	70.14
TraesCS2D01G179400.2	Wheat	nucleus	73.41	67.77
TraesCS2B01G198500.2	Wheat	nucleus	73.41	67.77
TraesCS2A01G172100.2	Wheat	nucleus	73.41	67.77
EER97523	Sorghum	nucleus	71.83	67.29
KRH49390	Soybean	nucleus	63.1	66.53
KRH00242	Soybean	nucleus	62.7	66.11
KRH38049	Soybean	nucleus	61.9	65.55
KRH65724	Soybean	nucleus	61.51	64.85
GSMUA_Achr10P...	Banana	nucleus	63.49	63.49
KRH61563	Soybean	cytosol	53.57	61.36
HORVU2Hr1G031990.2	Barley	nucleus	72.62	60.4
Zm00001d022110_P002	Maize	nucleus	71.03	56.83
KRH56367	Soybean	peroxisome	49.6	56.82
KRH69940	Soybean	peroxisome	48.02	55.0
KRH62601	Soybean	cytosol	32.14	52.26
GSMUA_AchrUn_...	Banana	nucleus	58.73	49.01
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	29.37	33.79
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	29.37	33.79

Protein Annotations

EntrezGene:100170695	MapMan:15.5.8	Gene3D:3.30.40.10	EMBL:ACUP02010313	InterPro:Alfin	EMBL:DQ973807
EnsemblPlantsGene:GLYMA_17G051600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042393	GO:GO:0046872
InterPro:IPR013083	InterPro:IPR019787	ProteinID:KRH02654.1	EnsemblPlants:KRH02655	ProteinID:KRH02655	ProteinID:KRH02655.1
ProteinID:KRH02656.1	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321
PANTHER:PTHR12321:SF98	UniProt:Q06A78	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI0000E443DC	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:3917409..3922035

Molecular Weight (calculated)

28557.2 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.744

Length

252 amino acids

Sequence
(BLAST)

001: MDGGGVNYNP RTVEQVFRDF KGRRAGMIKA LTTDVEEFFQ QCDPEKDNLC LYGFPNEQWE VNLPAEEVPP ELPEPALGIN FARDGMQDKD WLSLVAVHSD
101: AWLLAVAFYF GARFGFDNAD RKRLFSMIND LPTIFEIVTG SAKKQTKEKS SISNHSSNKS KSGSKGRGSE SGKYSKETKD EEEEVLDEED DEEHEETLCG
201: ACGEHYASDE FWICCDICEK WFHGKCVKIT PARAEHIKQY KCPSCSNKRA RP

Best Arabidopsis Sequence Match ( AT2G02470.1 )
(BLAST)

001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP

Arabidopsis Description

AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.