CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02655	Soybean	nucleus	97.21	96.83
VIT_11s0016g01500.t01	Wine grape	nucleus	91.24	90.87
KRH37475	Soybean	nucleus	89.64	90.73
KRH15616	Soybean	nucleus	86.85	85.16
KRH06119	Soybean	nucleus	84.86	84.19
KRH47546	Soybean	nucleus	84.46	83.79
KRH10063	Soybean	nucleus	79.28	80.24
KRH23260	Soybean	nucleus	78.49	80.08
KRH71913	Soybean	cytosol	30.28	80.0
KRH05401	Soybean	endoplasmic reticulum, nucleus, plastid	73.71	74.6
KRH51269	Soybean	nucleus	74.5	74.5
KRH01887	Soybean	nucleus	74.5	74.21
KRH26115	Soybean	endoplasmic reticulum, extracellular	25.9	73.86
Os07t0608400-01	Rice	nucleus	79.68	71.94
TraesCS2D01G179400.2	Wheat	nucleus	75.7	69.6
TraesCS2B01G198500.2	Wheat	nucleus	75.7	69.6
TraesCS2A01G172100.2	Wheat	nucleus	75.7	69.6
EER97523	Sorghum	nucleus	72.51	67.66
KRH49390	Soybean	nucleus	63.74	66.95
KRH00242	Soybean	nucleus	63.35	66.53
KRH38049	Soybean	nucleus	62.55	65.97
KRH65724	Soybean	nucleus	62.15	65.27
GSMUA_Achr10P...	Banana	nucleus	64.54	64.29
HORVU2Hr1G031990.2	Barley	nucleus	74.9	62.05
KRH61563	Soybean	cytosol	54.18	61.82
KRH56367	Soybean	peroxisome	50.6	57.73
Zm00001d022110_P002	Maize	nucleus	72.11	57.46
KRH69940	Soybean	peroxisome	49.0	55.91
KRH62601	Soybean	cytosol	32.67	52.9
GSMUA_AchrUn_...	Banana	nucleus	58.96	49.01
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	29.48	33.79
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	29.48	33.79

Protein Annotations

EntrezGene:100500110	MapMan:15.5.8	Gene3D:3.30.40.10	EMBL:ACUP02008171	InterPro:Alfin	EnsemblPlantsGene:GLYMA_13G107700
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0042393	GO:GO:0046872	UniProt:I1LY29	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:KRH19253
ProteinID:KRH19253	ProteinID:KRH19253.1	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016
PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	SMART:SM00249	SUPFAM:SSF57903	TMHMM:TMhelix	UniParc:UPI00023CFD3C
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:22210546..22214322

Molecular Weight (calculated)

28417.1 Da

IEP (calculated)

4.836

GRAVY (calculated)

-0.757

Length

251 amino acids

Sequence
(BLAST)

001: MDGGVNYNPR TVEEVFRDFK GRRAGMIKAL TTDVEEFFQQ CDPEKDNLCL YGFPNEQWEV NLPAEEVPPE LPEPALGINF ARDGMQDKDW LSLVAVHSDA
101: WLLAVAFYFG ARFGFDKADR KRLFTMINDL PTIFEIVTGS AKKQTKEKSS ISNHSSNKSK SGSKGRGSES GKYSKQTKDE EEEVPDEEDD EEHGETLCGA
201: CGENYASDEF WICCDICEKW FHGKCVKITP ARAEHIKQYK CPSCSNKRAR P

Best Arabidopsis Sequence Match ( AT5G20510.1 )
(BLAST)

001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP

Arabidopsis Description

AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.