Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KRH54981 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | KRH54981 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH51269 | Soybean | nucleus | 98.41 | 98.8 |
| CDY17594 | Canola | cytosol | 40.48 | 86.44 |
| Solyc01g102760.2.1 | Tomato | nucleus | 84.92 | 86.29 |
| Solyc01g102750.2.1 | Tomato | nucleus | 83.73 | 84.74 |
| PGSC0003DMT400047018 | Potato | nucleus | 83.33 | 84.68 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 84.52 | 84.19 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 80.16 | 82.79 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 80.16 | 82.79 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 80.16 | 82.79 |
| AT1G14510.1 | Thale cress | nucleus | 82.14 | 82.14 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 83.33 | 82.03 |
| CDX84026 | Canola | nucleus | 80.95 | 81.6 |
| CDX96851 | Canola | cytosol | 80.16 | 80.8 |
| Bra016698.1-P | Field mustard | cytosol | 80.16 | 80.8 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.49 | 80.17 |
| Bra024817.1-P | Field mustard | nucleus | 77.78 | 79.67 |
| CDY03049 | Canola | cytosol | 76.98 | 79.18 |
| CDX81645 | Canola | cytosol | 75.4 | 78.19 |
| CDY53545 | Canola | cytosol | 74.6 | 77.37 |
| KRH71913 | Soybean | cytosol | 28.97 | 76.84 |
| Bra026825.1-P | Field mustard | nucleus | 74.21 | 76.64 |
| KRH23260 | Soybean | nucleus | 73.81 | 75.61 |
| CDY17593 | Canola | cytosol | 35.32 | 75.42 |
| KRH37475 | Soybean | nucleus | 74.21 | 75.4 |
| KRH47546 | Soybean | nucleus | 75.4 | 75.1 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 75.0 | 74.7 |
| KRH19253 | Soybean | nucleus | 74.21 | 74.5 |
| GSMUA_Achr10P... | Banana | nucleus | 75.0 | 74.41 |
| KRH06119 | Soybean | nucleus | 74.6 | 74.31 |
| Zm00001d010241_P002 | Maize | cytosol | 47.62 | 74.07 |
| Os11t0244800-01 | Rice | nucleus | 74.6 | 74.02 |
| EES08261 | Sorghum | nucleus | 74.6 | 74.02 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 74.21 | 73.91 |
| GSMUA_Achr11P... | Banana | nucleus | 73.81 | 73.81 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 74.6 | 73.44 |
| KRH10063 | Soybean | nucleus | 72.22 | 73.39 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 73.41 | 73.12 |
| KRH15616 | Soybean | nucleus | 74.21 | 73.05 |
| TraesCS4D01G085300.1 | Wheat | peroxisome | 73.41 | 72.83 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 73.41 | 72.83 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 73.41 | 72.83 |
| KRH02655 | Soybean | nucleus | 72.62 | 72.62 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 73.02 | 72.44 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 72.22 | 71.94 |
| EES18243 | Sorghum | nucleus | 72.62 | 71.21 |
| Zm00001d038208_P001 | Maize | nucleus | 72.22 | 71.09 |
| Os05t0419100-01 | Rice | nucleus | 71.43 | 69.77 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 59.92 | 68.95 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 72.22 | 68.94 |
| EES05274 | Sorghum | nucleus | 69.44 | 68.36 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 71.03 | 68.32 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 71.03 | 68.06 |
| GSMUA_AchrUn_... | Banana | plastid | 34.13 | 67.19 |
| KRH38049 | Soybean | nucleus | 63.1 | 66.81 |
| KXG33847 | Sorghum | nucleus | 67.86 | 66.8 |
| OQU78932 | Sorghum | nucleus | 68.25 | 66.41 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 67.46 | 66.15 |
| KRH65724 | Soybean | nucleus | 62.7 | 66.11 |
| KRH49390 | Soybean | nucleus | 62.3 | 65.69 |
| KRH00242 | Soybean | nucleus | 62.3 | 65.69 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 68.25 | 65.4 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 67.86 | 65.02 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 67.86 | 65.02 |
| Os01t0887700-01 | Rice | nucleus | 69.84 | 64.71 |
| Os02t0564100-01 | Rice | nucleus | 68.25 | 64.42 |
| Os04t0444900-01 | Rice | nucleus | 65.08 | 64.06 |
| Zm00001d041767_P002 | Maize | nucleus | 67.06 | 63.77 |
| KRH26115 | Soybean | endoplasmic reticulum, extracellular | 22.22 | 63.64 |
| KXG26388 | Sorghum | cytosol | 62.3 | 62.8 |
| KRH05401 | Soybean | endoplasmic reticulum, nucleus, plastid | 61.11 | 62.1 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 69.05 | 61.7 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 69.44 | 60.98 |
| KRH56367 | Soybean | peroxisome | 52.78 | 60.45 |
| KRH69940 | Soybean | peroxisome | 51.19 | 58.64 |
| Zm00001d012196_P005 | Maize | nucleus | 66.67 | 58.54 |
| KRH62601 | Soybean | cytosol | 34.52 | 56.13 |
| Zm00001d023962_P001 | Maize | nucleus | 67.46 | 55.19 |
| KRH61563 | Soybean | cytosol | 45.63 | 52.27 |
| Zm00001d025504_P001 | Maize | nucleus | 50.4 | 51.21 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 67.86 | 48.86 |
| GSMUA_Achr10P... | Banana | nucleus | 45.63 | 44.23 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 46.03 | 40.99 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 45.24 | 40.28 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 45.24 | 40.28 |
| Zm00001d025491_P002 | Maize | nucleus | 53.97 | 37.36 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 28.17 | 32.42 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 28.17 | 32.42 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 45.24 | 32.11 |
Protein Annotations
| EntrezGene:100807826 | MapMan:15.5.8 | Gene3D:3.30.40.10 | EMBL:ACUP02010288 | InterPro:Alfin | EnsemblPlantsGene:GLYMA_17G002600 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | UniProt:I1MQU2 |
| InterPro:IPR013083 | InterPro:IPR019787 | EnsemblPlants:KRH01887 | ProteinID:KRH01887 | ProteinID:KRH01887.1 | PFAM:PF00628 |
| PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF60 | SMART:SM00249 |
| SUPFAM:SSF57903 | UniParc:UPI00023D5296 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr17:-:298721..304372
Molecular Weight (calculated)
28414.4 Da
IEP (calculated)
4.902
GRAVY (calculated)
-0.692
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGVPHPIPR TVEEVFTDFK GRRAGLIKAL TTDVEKFYQQ CDPEKENLCL YGFPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW LSLVAVHSDS
101: WLLAVAFYFG ARFGFGKNER KRLFQMINDL PTIFELVTGS ARQSKDQPAA HNNGSKCKSS GKSRQSESQA KGMKMSAPPK EEDESGEEEE EDDEQGATCG
201: ACGDNYGTDE FWICCDMCER WFHGKCVKIT PAKAEHIKQY KCPSCSNKRV RV
101: WLLAVAFYFG ARFGFGKNER KRLFQMINDL PTIFELVTGS ARQSKDQPAA HNNGSKCKSS GKSRQSESQA KGMKMSAPPK EEDESGEEEE EDDEQGATCG
201: ACGDNYGTDE FWICCDMCER WFHGKCVKIT PAKAEHIKQY KCPSCSNKRV RV
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
Arabidopsis Description
AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.