Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 5
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P30890_001 | |
| GSMUA_Achr7P16220_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | GSMUA_Achr6P30890_001 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | GSMUA_Achr7P16220_001 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17593 | Canola | cytosol | 57.03 | 61.86 |
| GSMUA_Achr10P... | Banana | nucleus | 18.75 | 42.86 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 81.25 | 41.11 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 82.03 | 41.02 |
| GSMUA_Achr10P... | Banana | nucleus | 74.22 | 37.4 |
| GSMUA_Achr11P... | Banana | nucleus | 73.44 | 37.3 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 71.88 | 36.36 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 71.09 | 35.97 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 71.09 | 35.97 |
| Solyc01g102750.2.1 | Tomato | nucleus | 66.41 | 34.14 |
| KRH01887 | Soybean | nucleus | 67.19 | 34.13 |
| PGSC0003DMT400047018 | Potato | nucleus | 65.62 | 33.87 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 66.41 | 33.6 |
| KRH51269 | Soybean | nucleus | 65.62 | 33.47 |
| Solyc01g102760.2.1 | Tomato | nucleus | 64.06 | 33.06 |
| CDY45267 | Canola | nucleus | 52.34 | 32.84 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 64.06 | 32.67 |
| GSMUA_Achr10P... | Banana | extracellular | 35.16 | 31.25 |
| CDX84026 | Canola | nucleus | 60.94 | 31.2 |
| CDX96851 | Canola | cytosol | 60.16 | 30.8 |
| Bra016698.1-P | Field mustard | cytosol | 60.16 | 30.8 |
| AT1G14510.1 | Thale cress | nucleus | 60.16 | 30.56 |
| CDY03049 | Canola | cytosol | 57.81 | 30.2 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 60.16 | 30.08 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 57.03 | 29.92 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 57.03 | 29.92 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 57.03 | 29.92 |
| Bra024817.1-P | Field mustard | nucleus | 57.03 | 29.67 |
| Bra026825.1-P | Field mustard | nucleus | 56.25 | 29.51 |
| CDY53545 | Canola | cytosol | 55.47 | 29.22 |
| Bra026210.1-P | Field mustard | nucleus | 57.03 | 29.2 |
| CDY65375 | Canola | nucleus | 55.47 | 29.1 |
| GSMUA_Achr10P... | Banana | nucleus | 54.69 | 28.93 |
| CDX81645 | Canola | cytosol | 54.69 | 28.81 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 53.91 | 28.51 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 53.12 | 28.1 |
| GSMUA_Achr10P... | Banana | nucleus | 49.22 | 25.0 |
| GSMUA_Achr10P... | Banana | nucleus | 39.06 | 21.93 |
| GSMUA_Achr10P... | Banana | nucleus | 38.28 | 18.85 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.75 | 18.54 |
| GSMUA_Achr10P... | Banana | cytosol | 13.28 | 9.39 |
| GSMUA_Achr10P... | Banana | cytosol | 2.34 | 2.0 |
| GSMUA_Achr10P... | Banana | cytosol | 2.34 | 1.57 |
| GSMUA_Achr10P... | Banana | cytosol | 2.34 | 1.55 |
| CDY17594 | Canola | cytosol | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_AchrUn_randomG12630_001 |
| EnsemblPlants:GSMUA_AchrUn_randomP12630_001 | EnsemblPlants:GSMUA_AchrUn_randomT12630_001 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:M0U8M2 | PFAM:PF00628 |
| ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 |
| UniParc:UPI0002959D16 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12630_001]
Coordinates
chrchrUn_random:-:60527451..60528221
Molecular Weight (calculated)
14514.8 Da
IEP (calculated)
6.733
GRAVY (calculated)
-1.090
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MINNLPTIYE VVTGTTKRQF KEKTSNSSSK NKSSSKMSRP AESQTKALRM PTPKEDEDSG ADEEEDEQEH ENTLCGACGD NYANDEFWIC CDVCERWFHG
101: KCVKITPARA EHIKQYKCPS CSNKRARA
101: KCVKITPARA EHIKQYKCPS CSNKRARA
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
Arabidopsis Description
AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.