Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P30890_001 | |
| GSMUA_Achr7P16220_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | GSMUA_Achr6P30890_001 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | GSMUA_Achr7P16220_001 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 28.46 | 61.16 |
| CDY17594 | Canola | cytosol | 24.62 | 54.24 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 50.38 | 51.78 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 48.85 | 49.61 |
| GSMUA_Achr11P... | Banana | nucleus | 46.92 | 48.41 |
| GSMUA_Achr10P... | Banana | nucleus | 46.92 | 48.03 |
| EES05274 | Sorghum | nucleus | 46.92 | 47.66 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 46.15 | 47.43 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 45.77 | 47.41 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 45.77 | 47.04 |
| Os02t0564100-01 | Rice | nucleus | 48.08 | 46.82 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 43.85 | 46.72 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 43.85 | 46.72 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 43.85 | 46.72 |
| GSMUA_Achr10P... | Banana | cytosol | 26.92 | 46.67 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 45.38 | 46.64 |
| Bra026825.1-P | Field mustard | nucleus | 43.46 | 46.31 |
| CDY53545 | Canola | cytosol | 43.08 | 46.09 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 44.62 | 45.85 |
| KRH51269 | Soybean | nucleus | 44.23 | 45.82 |
| KRH01887 | Soybean | nucleus | 44.23 | 45.63 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 44.62 | 45.31 |
| CDX81645 | Canola | cytosol | 42.31 | 45.27 |
| KXG26388 | Sorghum | cytosol | 43.46 | 45.2 |
| PGSC0003DMT400047018 | Potato | nucleus | 43.08 | 45.16 |
| Solyc01g102750.2.1 | Tomato | nucleus | 43.08 | 44.98 |
| AT1G14510.1 | Thale cress | nucleus | 43.46 | 44.84 |
| GSMUA_Achr10P... | Banana | cytosol | 31.15 | 44.75 |
| Bra024817.1-P | Field mustard | nucleus | 42.31 | 44.72 |
| CDY03049 | Canola | cytosol | 41.92 | 44.49 |
| Solyc01g102760.2.1 | Tomato | nucleus | 42.31 | 44.35 |
| GSMUA_Achr10P... | Banana | nucleus | 42.31 | 43.65 |
| Bra016698.1-P | Field mustard | cytosol | 41.54 | 43.2 |
| CDX84026 | Canola | nucleus | 41.54 | 43.2 |
| CDX96851 | Canola | cytosol | 41.54 | 43.2 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 46.54 | 42.91 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 46.92 | 42.51 |
| Os04t0444900-01 | Rice | nucleus | 41.54 | 42.19 |
| CDY65375 | Canola | nucleus | 39.23 | 41.8 |
| Zm00001d025504_P001 | Maize | nucleus | 39.23 | 41.13 |
| GSMUA_Achr10P... | Banana | nucleus | 8.85 | 41.07 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 38.08 | 40.91 |
| Bra026210.1-P | Field mustard | nucleus | 39.23 | 40.8 |
| GSMUA_Achr10P... | Banana | nucleus | 37.69 | 40.5 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 37.31 | 40.08 |
| GSMUA_AchrUn_... | Banana | plastid | 18.85 | 38.28 |
| GSMUA_Achr10P... | Banana | cytosol | 28.08 | 38.22 |
| CDY17593 | Canola | cytosol | 16.92 | 37.29 |
| GSMUA_Achr10P... | Banana | cytosol | 27.31 | 36.79 |
| CDY45267 | Canola | nucleus | 28.46 | 36.27 |
| GSMUA_Achr10P... | Banana | nucleus | 31.15 | 35.53 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.77 | 35.1 |
| GSMUA_Achr10P... | Banana | extracellular | 18.08 | 32.64 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 35.38 | 32.51 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 34.62 | 31.8 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 34.62 | 31.8 |
| Zm00001d025491_P002 | Maize | nucleus | 39.62 | 28.3 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 34.62 | 25.35 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr10G04330_001 | EnsemblPlants:GSMUA_Achr10P04330_001 | EnsemblPlants:GSMUA_Achr10T04330_001 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M0RFB0 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000296814B | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
Putative PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr10G04330_001]
Coordinates
chr10:+:14004638..14007745
Molecular Weight (calculated)
29906.3 Da
IEP (calculated)
4.385
GRAVY (calculated)
-0.858
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLGRSASTY REAEDLFKDF RGRRAGMIKA LTTDFTKFYQ QCDPEKDNLY LYAFADETWE VRERPEKVLT EFPELVIGIN LARDVTEEKR WLANVACHSD
101: AWLLSFSLYW SLRFGFDKET RRQLFVMINT LPTISEVFLG AANNGEKETI PSNSIKDGPS SEKASKIGPL TTTRDDEHEH DDDDDDNDDD DDDDDDDDDA
201: EDDGTCGACS KTHRQGEFWI CCDACKKWYH AECVRITPSQ AEQIKQYKCP RCCRRKTPSA
101: AWLLSFSLYW SLRFGFDKET RRQLFVMINT LPTISEVFLG AANNGEKETI PSNSIKDGPS SEKASKIGPL TTTRDDEHEH DDDDDDNDDD DDDDDDDDDA
201: EDDGTCGACS KTHRQGEFWI CCDACKKWYH AECVRITPSQ AEQIKQYKCP RCCRRKTPSA
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.