Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G311200.1 | Wheat | nucleus | 96.47 | 96.47 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 95.05 | 95.05 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 81.63 | 65.07 |
| CDY17594 | Canola | cytosol | 21.2 | 50.85 |
| Os04t0444900-01 | Rice | nucleus | 45.23 | 50.0 |
| Solyc01g102750.2.1 | Tomato | nucleus | 41.34 | 46.99 |
| KXG26388 | Sorghum | cytosol | 41.34 | 46.8 |
| PGSC0003DMT400047018 | Potato | nucleus | 40.99 | 46.77 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 41.34 | 46.06 |
| Solyc01g102760.2.1 | Tomato | nucleus | 39.93 | 45.56 |
| KRH01887 | Soybean | nucleus | 40.28 | 45.24 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 40.28 | 45.06 |
| KRH51269 | Soybean | nucleus | 39.93 | 45.02 |
| Bra026825.1-P | Field mustard | nucleus | 38.16 | 44.26 |
| CDY53545 | Canola | cytosol | 37.81 | 44.03 |
| CDY65375 | Canola | nucleus | 37.81 | 43.85 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 37.81 | 43.85 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 37.81 | 43.85 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 37.81 | 43.85 |
| CDX81645 | Canola | cytosol | 37.46 | 43.62 |
| AT1G14510.1 | Thale cress | nucleus | 38.52 | 43.25 |
| TraesCS2B01G198500.2 | Wheat | nucleus | 41.34 | 42.86 |
| Bra026210.1-P | Field mustard | nucleus | 37.81 | 42.8 |
| Zm00001d025504_P001 | Maize | nucleus | 37.1 | 42.34 |
| Bra024817.1-P | Field mustard | nucleus | 36.75 | 42.28 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 37.46 | 42.23 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 39.22 | 42.21 |
| CDY03049 | Canola | cytosol | 36.4 | 42.04 |
| CDX84026 | Canola | nucleus | 37.1 | 42.0 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 37.81 | 41.8 |
| CDY45267 | Canola | nucleus | 30.04 | 41.67 |
| CDX96851 | Canola | cytosol | 36.75 | 41.6 |
| Bra016698.1-P | Field mustard | cytosol | 36.75 | 41.6 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 38.16 | 41.06 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 36.04 | 39.69 |
| CDY17593 | Canola | cytosol | 15.19 | 36.44 |
| GSMUA_Achr10P... | Banana | nucleus | 31.8 | 34.62 |
| Zm00001d025491_P002 | Maize | nucleus | 39.93 | 31.04 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 21.91 | 28.31 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 21.91 | 28.31 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS2B01G329700 |
| EnsemblPlants:TraesCS2B01G329700.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd15517 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:474403390..474406862
Molecular Weight (calculated)
31418.0 Da
IEP (calculated)
5.207
GRAVY (calculated)
-0.488
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGVVSSAV HPNGHSPEFV FRQYRGRRAG IVKALTXDVE EFYEQCDPDE KALCLFGLPD GTWEVSQLPE EIPVQLPEPV CGINFARDVT PKKVWLSMIA
101: IHSDAWLMSI AFYHAGRVSF DRVGREQLFR LINRLPTVYE AVTGSYERQA QTPNGSRKNK SSSQPPNQFT SNCKPVTPAL PMPKEDYYAD FNSWKVMEDR
201: PMLKEEDGGK EGGGSEDQAI TKCAGCQEIY SANDGHLWIG CDHCQRWFHG KCVGVTAEMA NGIEDYMCPG CSYKATTKAS DSI
101: IHSDAWLMSI AFYHAGRVSF DRVGREQLFR LINRLPTVYE AVTGSYERQA QTPNGSRKNK SSSQPPNQFT SNCKPVTPAL PMPKEDYYAD FNSWKVMEDR
201: PMLKEEDGGK EGGGSEDQAI TKCAGCQEIY SANDGHLWIG CDHCQRWFHG KCVGVTAEMA NGIEDYMCPG CSYKATTKAS DSI
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.