Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G085300.1 | Wheat | peroxisome | 99.61 | 99.61 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 99.61 | 99.61 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 98.82 | 98.82 |
| Os11t0244800-01 | Rice | nucleus | 94.88 | 94.88 |
| EES08261 | Sorghum | nucleus | 94.09 | 94.09 |
| CDY17594 | Canola | cytosol | 38.19 | 82.2 |
| Zm00001d041767_P002 | Maize | nucleus | 79.13 | 75.85 |
| Solyc01g102760.2.1 | Tomato | nucleus | 73.62 | 75.4 |
| PGSC0003DMT400047018 | Potato | nucleus | 72.83 | 74.6 |
| Solyc01g102750.2.1 | Tomato | nucleus | 72.83 | 74.3 |
| KRH01887 | Soybean | nucleus | 72.83 | 73.41 |
| KRH51269 | Soybean | nucleus | 72.44 | 73.31 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 72.83 | 73.12 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 69.29 | 72.13 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 69.29 | 72.13 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 69.29 | 72.13 |
| Bra024817.1-P | Field mustard | nucleus | 69.29 | 71.54 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 74.02 | 71.48 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 71.26 | 70.7 |
| AT1G14510.1 | Thale cress | nucleus | 70.08 | 70.63 |
| CDY03049 | Canola | cytosol | 67.72 | 70.2 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 72.44 | 69.96 |
| CDX84026 | Canola | nucleus | 67.72 | 68.8 |
| CDX96851 | Canola | cytosol | 67.72 | 68.8 |
| Bra016698.1-P | Field mustard | cytosol | 67.72 | 68.8 |
| CDY53545 | Canola | cytosol | 64.96 | 67.9 |
| CDX81645 | Canola | cytosol | 64.57 | 67.49 |
| Bra026825.1-P | Field mustard | nucleus | 64.57 | 67.21 |
| Zm00001d023962_P001 | Maize | nucleus | 80.71 | 66.56 |
| CDY17593 | Canola | cytosol | 29.92 | 64.41 |
| Bra026210.1-P | Field mustard | nucleus | 63.39 | 64.4 |
| CDY65375 | Canola | nucleus | 61.81 | 64.34 |
| TraesCS2B01G198500.2 | Wheat | nucleus | 68.9 | 64.1 |
| CDY45267 | Canola | nucleus | 51.18 | 63.73 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 56.69 | 57.37 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 57.48 | 56.81 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 46.06 | 41.34 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 29.13 | 33.79 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 29.13 | 33.79 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS4B01G088200 |
| EnsemblPlants:TraesCS4B01G088200.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd15613 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:89286058..89294390
Molecular Weight (calculated)
28559.5 Da
IEP (calculated)
5.934
GRAVY (calculated)
-0.816
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGTHRTP EDVFRDFRAR RAGMIKALTT DVEKFYQQCD PEKENLCLYG LPNETWEVNL PAEEVPPELP EPALGINFAR DGMDEKDWLS LVAVHSDAWL
101: LAVAFYFGAR FGFDKESRKR LFSMINNLPT IYEVVTGTAK KQVKEKHPKS SSKISKSGTK PSRQPEPNSR GPKMPPPPKD EDDSGGEEEE GEEHEKALCG
201: ACNDNYGQDE FWICCDACET WFHGKCVKIT PAKAEHIKHY KCPNCSSSSK RARA
101: LAVAFYFGAR FGFDKESRKR LFSMINNLPT IYEVVTGTAK KQVKEKHPKS SSKISKSGTK PSRQPEPNSR GPKMPPPPKD EDDSGGEEEE GEEHEKALCG
201: ACNDNYGQDE FWICCDACET WFHGKCVKIT PAKAEHIKHY KCPNCSSSSK RARA
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.