Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d032143_P001 | |
| Zm00001d051057_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | Zm00001d032143_P001 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | Zm00001d051057_P002 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU78932 | Sorghum | nucleus | 91.7 | 93.82 |
| Zm00001d049007_P001 | Maize | cytosol | 39.25 | 88.14 |
| Os11t0244800-01 | Rice | nucleus | 76.6 | 79.92 |
| CDY17594 | Canola | cytosol | 35.47 | 79.66 |
| Zm00001d023962_P001 | Maize | nucleus | 92.45 | 79.55 |
| TraesCS4D01G085300.1 | Wheat | peroxisome | 76.23 | 79.53 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 76.23 | 79.53 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 75.85 | 79.13 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 75.47 | 78.74 |
| Zm00001d010241_P002 | Maize | cytosol | 44.53 | 72.84 |
| Zm00001d049006_P001 | Maize | plastid | 35.09 | 70.99 |
| Solyc01g102760.2.1 | Tomato | nucleus | 64.91 | 69.35 |
| PGSC0003DMT400047018 | Potato | nucleus | 64.53 | 68.95 |
| Solyc01g102750.2.1 | Tomato | nucleus | 64.53 | 68.67 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 64.53 | 67.59 |
| Bra024817.1-P | Field mustard | nucleus | 62.64 | 67.48 |
| KRH01887 | Soybean | nucleus | 63.77 | 67.06 |
| KRH51269 | Soybean | nucleus | 63.4 | 66.93 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 61.51 | 66.8 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 61.51 | 66.8 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 61.51 | 66.8 |
| CDY03049 | Canola | cytosol | 61.51 | 66.53 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 64.15 | 66.15 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 63.4 | 65.62 |
| AT1G14510.1 | Thale cress | nucleus | 62.26 | 65.48 |
| CDX81645 | Canola | cytosol | 60.0 | 65.43 |
| Zm00001d038208_P001 | Maize | nucleus | 63.02 | 65.23 |
| CDY53545 | Canola | cytosol | 59.62 | 65.02 |
| Bra026825.1-P | Field mustard | nucleus | 59.25 | 64.34 |
| CDX84026 | Canola | nucleus | 59.62 | 63.2 |
| Bra016698.1-P | Field mustard | cytosol | 59.25 | 62.8 |
| CDX96851 | Canola | cytosol | 59.25 | 62.8 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 66.42 | 62.41 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 65.66 | 60.63 |
| CDY65375 | Canola | nucleus | 55.47 | 60.25 |
| CDY45267 | Canola | nucleus | 46.04 | 59.8 |
| Bra026210.1-P | Field mustard | nucleus | 56.23 | 59.6 |
| Zm00001d044178_P001 | Maize | cytosol | 20.75 | 59.14 |
| CDY17593 | Canola | cytosol | 26.04 | 58.47 |
| Zm00001d012196_P005 | Maize | nucleus | 63.02 | 58.19 |
| Zm00001d009466_P001 | Maize | cytosol | 20.75 | 56.7 |
| Zm00001d005185_P001 | Maize | nucleus | 50.57 | 55.6 |
| Zm00001d010834_P001 | Maize | nucleus | 52.45 | 54.94 |
| Zm00001d028496_P001 | Maize | cytosol | 20.75 | 54.46 |
| Zm00001d034627_P002 | Maize | nucleus | 49.06 | 52.0 |
| Zm00001d037537_P001 | Maize | nucleus | 50.57 | 51.94 |
| Zm00001d036294_P001 | Maize | plastid | 24.91 | 51.16 |
| Zm00001d025504_P001 | Maize | nucleus | 46.42 | 49.6 |
| Zm00001d022110_P002 | Maize | nucleus | 57.74 | 48.57 |
| Zm00001d025491_P002 | Maize | nucleus | 50.57 | 36.81 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.92 | 33.79 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.92 | 33.79 |
Protein Annotations
| EntrezGene:100283100 | MapMan:15.5.8 | Gene3D:3.30.40.10 | UniProt:A0A1D6MY24 | InterPro:Alfin | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 |
| ProteinID:ONM33629.1 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0008429759 | InterPro:Zinc_finger_PHD-type_CS | EnsemblPlantsGene:Zm00001d041767 |
| EnsemblPlants:Zm00001d041767_P002 | EnsemblPlants:Zm00001d041767_T002 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
Alfin-like-transcription factor 4PHD finger protein ALFIN-LIKE 6
Coordinates
chr3:-:136598676..136603856
Molecular Weight (calculated)
29645.1 Da
IEP (calculated)
5.120
GRAVY (calculated)
-0.591
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGAGFPGT QPVSRSPEDV FRDYRARQAG LIRALTTDVE KFYVMCDPEK ENLCLYGLPN ETWEINLPAE EVPPELPEPA LGINFARDGM DEKDWLSLVA
101: VHSDSWLMSV AFYFGARFGF DKESSHLLVV ACRKRLFTMI NNLPSIYEVV TGTAKKEPKE KTPKSNIKTN KSGSKPSRHA EPNSRVPKMP PPKDEESEEE
201: EGEPQEDQES ALCGACGLGY DDFWICCDLC ETWFHGKCVK ITPAKADHIK QYKCPSCTGS KRAKV
101: VHSDSWLMSV AFYFGARFGF DKESSHLLVV ACRKRLFTMI NNLPSIYEVV TGTAKKEPKE KTPKSNIKTN KSGSKPSRHA EPNSRVPKMP PPKDEESEEE
201: EGEPQEDQES ALCGACGLGY DDFWICCDLC ETWFHGKCVK ITPAKADHIK QYKCPSCTGS KRAKV
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.