Factsheet for Zm00001d005185_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010241_P002
Zm00001d012196_P005
Zm00001d016861_P003
Zm00001d023962_P001
Zm00001d025491_P002
Zm00001d025504_P001
Zm00001d038208_P001
Zm00001d041767_P002
Zm00001d042582_P001
Zm00001d050816_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	Zm00001d010241_P002	AT1G14510.1	21798944
AT3G11200.1	Zm00001d012196_P005	AT1G14510.1	21798944
AT3G11200.1	Zm00001d016861_P003	AT1G14510.1	21798944
AT3G11200.1	Zm00001d023962_P001	AT1G14510.1	21798944
AT3G11200.1	Zm00001d025491_P002	AT1G14510.1	21798944
AT3G11200.1	Zm00001d025504_P001	AT1G14510.1	21798944
AT3G11200.1	Zm00001d038208_P001	AT1G14510.1	21798944
AT3G11200.1	Zm00001d041767_P002	AT1G14510.1	21798944
AT3G11200.1	Zm00001d042582_P001	AT1G14510.1	21798944
AT3G11200.1	Zm00001d050816_P002	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88744	Sorghum	cytosol	91.29	90.91
Os07t0233300-01	Rice	nucleus	76.76	75.82
HORVU2Hr1G052960.2	Barley	cytosol	75.93	74.39
Zm00001d034627_P002	Maize	nucleus	74.27	71.6
VIT_13s0067g01000.t01	Wine grape	nucleus	68.05	68.05
VIT_08s0105g00360.t01	Wine grape	nucleus	68.05	67.49
GSMUA_Achr7P15530_001	Banana	nucleus	67.63	67.36
GSMUA_Achr10P...	Banana	nucleus	67.63	67.36
PGSC0003DMT400049364	Potato	nucleus	66.81	67.08
Solyc10g076690.1.1	Tomato	nucleus	66.81	67.08
KRH65724	Soybean	nucleus	66.39	66.95
GSMUA_Achr2P18960_001	Banana	nucleus	66.81	66.53
KRH38049	Soybean	nucleus	65.56	66.39
KRH49390	Soybean	nucleus	65.56	66.11
Zm00001d049007_P001	Maize	cytosol	32.37	66.1
PGSC0003DMT400059399	Potato	nucleus	65.98	65.98
KRH00242	Soybean	nucleus	65.15	65.69
Solyc09g005360.2.1	Tomato	nucleus	65.56	65.56
AT3G11200.1	Thale cress	nucleus	65.98	64.63
PGSC0003DMT400028638	Potato	nucleus	63.9	64.17
Solyc10g085180.1.1	Tomato	nucleus	63.49	63.75
CDX73886	Canola	nucleus	64.73	63.67
Bra034169.1-P	Field mustard	nucleus	65.98	63.6
AT5G05610.1	Thale cress	nucleus	63.49	63.49
CDY00726	Canola	nucleus	64.32	63.27
CDY36305	Canola	cytosol	64.73	62.4
OQU88643	Sorghum	extracellular, golgi, mitochondrion	31.12	61.98
Bra034860.1-P	Field mustard	nucleus	63.49	61.94
CDY08544	Canola	nucleus	63.49	61.94
CDY01002	Canola	nucleus	63.9	61.6
KRH56367	Soybean	peroxisome	55.19	60.45
CDX70142	Canola	cytosol	58.92	59.17
Bra009121.1-P	Field mustard	nucleus	58.51	58.75
KRH69940	Soybean	peroxisome	53.53	58.64
Bra001393.1-P	Field mustard	nucleus	60.58	58.4
CDX98851	Canola	nucleus	57.68	57.92
Solyc06g051420.2.1	Tomato	nucleus	58.51	57.55
Zm00001d010834_P001	Maize	nucleus	60.17	57.31
Zm00001d010241_P002	Maize	cytosol	36.51	54.32
Zm00001d037537_P001	Maize	nucleus	57.26	53.49
Zm00001d038208_P001	Maize	nucleus	54.77	51.56
CDY36322	Canola	cytosol, plasma membrane, plastid	60.58	50.69
Zm00001d041767_P002	Maize	nucleus	55.6	50.57
Zm00001d042582_P001	Maize	cytosol, mitochondrion, nucleus	52.7	49.42
Zm00001d016861_P003	Maize	cytosol, nucleus, plastid	56.85	48.58
Zm00001d050816_P002	Maize	cytosol, endoplasmic reticulum, nucleus	57.26	48.08
Zm00001d044178_P001	Maize	cytosol	17.84	46.24
Zm00001d028496_P001	Maize	cytosol	19.09	45.54
Zm00001d009466_P001	Maize	cytosol	18.26	45.36
Zm00001d012196_P005	Maize	nucleus	52.7	44.25
Zm00001d025504_P001	Maize	nucleus	45.23	43.95
Zm00001d023962_P001	Maize	nucleus	56.02	43.83
Zm00001d049006_P001	Maize	plastid	23.24	42.75
Zm00001d036294_P001	Maize	plastid	22.41	41.86
Zm00001d022110_P002	Maize	nucleus	53.53	40.95
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	32.37	35.62
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	32.37	35.62
Zm00001d025491_P002	Maize	nucleus	49.38	32.69

Protein Annotations

EntrezGene:100283842	MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	UniProt:B4FM57	EMBL:BT038195
EMBL:EU966144	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042393	GO:GO:0046872
InterPro:IPR013083	InterPro:IPR019787	EMBL:KJ728341	ProteinID:ONM20557.1	PFAM:PF00628	PFAM:PF12165
ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF96	SMART:SM00249	SUPFAM:SSF57903
UniParc:UPI00017B6BCE	InterPro:Zinc_finger_PHD-type_CS	EnsemblPlantsGene:Zm00001d005185	EnsemblPlants:Zm00001d005185_P001	EnsemblPlants:Zm00001d005185_T001	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Alfin-like-transcription factor 19PHD finger protein ALFIN-LIKE 2

Coordinates

chr2:+:162911443..162914524

Molecular Weight (calculated)

27184.0 Da

IEP (calculated)

7.357

GRAVY (calculated)

-0.634

Length

241 amino acids

Sequence
(BLAST)

001: MAGPVSSAPR TVEDIYKDYA ARRAGLVRAL TSDVDGFYSM CDPEKENLCL YGLPNGGWEV SLPVEEVPPE MPEPALGINF ARDGMRRRDW LSLVAVHSDA
101: WLVSVAFFFA AKLNGNDRKR LFNMINDHPS VYEIMADRKG RENNPGVDNS SKSRHSTKRS NDGKIKNSRV AVGECRYEND EDHSETLCGS CSGLYNSSEF
201: WIGCDICERW FHGKCVRITP AKAEQIKHYK CPDCSYKKSR Q

Best Arabidopsis Sequence Match ( AT3G11200.1 )
(BLAST)

001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ

Arabidopsis Description

AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.