Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G064250.4 | |
| HORVU2Hr1G077670.3 | |
| HORVU3Hr1G090540.1 | |
| HORVU4Hr1G015060.3 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0233300-01 | Rice | nucleus | 88.21 | 88.93 |
| OQU88744 | Sorghum | cytosol | 78.05 | 79.34 |
| Zm00001d005185_P001 | Maize | nucleus | 74.39 | 75.93 |
| GSMUA_Achr10P... | Banana | nucleus | 71.14 | 72.31 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 70.73 | 71.9 |
| VIT_13s0067g01000.t01 | Wine grape | nucleus | 69.92 | 71.37 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 69.92 | 70.78 |
| KRH65724 | Soybean | nucleus | 68.29 | 70.29 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 69.11 | 70.25 |
| KRH38049 | Soybean | nucleus | 67.48 | 69.75 |
| Solyc10g076690.1.1 | Tomato | nucleus | 67.89 | 69.58 |
| PGSC0003DMT400049364 | Potato | nucleus | 67.89 | 69.58 |
| PGSC0003DMT400059399 | Potato | nucleus | 67.07 | 68.46 |
| KRH49390 | Soybean | nucleus | 66.26 | 68.2 |
| Solyc09g005360.2.1 | Tomato | nucleus | 66.67 | 68.05 |
| PGSC0003DMT400028638 | Potato | nucleus | 66.26 | 67.92 |
| KRH00242 | Soybean | nucleus | 65.85 | 67.78 |
| Solyc10g085180.1.1 | Tomato | nucleus | 65.45 | 67.08 |
| AT5G05610.1 | Thale cress | nucleus | 65.04 | 66.39 |
| AT3G11200.1 | Thale cress | nucleus | 65.85 | 65.85 |
| CDX73886 | Canola | nucleus | 65.45 | 65.71 |
| CDY00726 | Canola | nucleus | 64.63 | 64.9 |
| Bra034860.1-P | Field mustard | nucleus | 65.04 | 64.78 |
| CDY08544 | Canola | nucleus | 65.04 | 64.78 |
| CDY36305 | Canola | cytosol | 64.63 | 63.6 |
| CDY01002 | Canola | nucleus | 64.63 | 63.6 |
| Solyc06g051420.2.1 | Tomato | nucleus | 63.01 | 63.27 |
| Bra034169.1-P | Field mustard | nucleus | 64.23 | 63.2 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 69.11 | 61.82 |
| KRH56367 | Soybean | peroxisome | 54.88 | 61.36 |
| CDX70142 | Canola | cytosol | 59.76 | 61.25 |
| Bra009121.1-P | Field mustard | nucleus | 59.35 | 60.83 |
| CDX98851 | Canola | nucleus | 59.35 | 60.83 |
| KRH69940 | Soybean | peroxisome | 53.25 | 59.55 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 29.27 | 59.5 |
| Bra001393.1-P | Field mustard | nucleus | 60.16 | 59.2 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 56.1 | 54.33 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 55.28 | 51.52 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 58.94 | 50.35 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 58.13 | 47.19 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 64.23 | 46.61 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 26.02 | 42.67 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 53.66 | 37.71 |
| HORVU7Hr1G021380.1 | Barley | plastid | 26.42 | 33.16 |
| HORVU0Hr1G025310.1 | Barley | plastid | 22.36 | 32.93 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 39.84 | 27.61 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | EMBL:AK358015 | InterPro:Alfin | UniProt:F2D2A8 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:HORVU2Hr1G052960 | EnsemblPlants:HORVU2Hr1G052960.2 |
| InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0002005405 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D2A8]
Coordinates
chrchr2H:+:320298179..320307879
Molecular Weight (calculated)
27970.8 Da
IEP (calculated)
6.977
GRAVY (calculated)
-0.723
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMVAAPVSP APRTVEDIFK DFSNRRSTLV RALTVDVEDF YRYCDPEKEN LCLYGHPNGS WEVALPAEEV PPEMPEPALG INFARDGMHR RDWLSLVAVH
101: SDSWLLSVAF FFGARLNANE RKRLFTMIND QPTVLESLSE RKHGRDNKSG VDNSGKSRHS GKRTNNDMQT KNSRPAVVDD AYKDDDEHSE TLCGTCGGRY
201: NASEFWIGCD ICERWFHGKC VRITPAKAEH IKHYKCPDCS SKKSRQ
101: SDSWLLSVAF FFGARLNANE RKRLFTMIND QPTVLESLSE RKHGRDNKSG VDNSGKSRHS GKRTNNDMQT KNSRPAVVDD AYKDDDEHSE TLCGTCGGRY
201: NASEFWIGCD ICERWFHGKC VRITPAKAEH IKHYKCPDCS SKKSRQ
001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
Arabidopsis Description
AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.