Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400047018 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11200.1 | PGSC0003DMT400047018 | AT1G14510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g085180.1.1 | Tomato | nucleus | 94.17 | 94.17 |
| PGSC0003DMT400059399 | Potato | nucleus | 83.75 | 83.4 |
| PGSC0003DMT400049364 | Potato | nucleus | 80.0 | 80.0 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 80.0 | 79.01 |
| KRH38049 | Soybean | nucleus | 77.08 | 77.73 |
| KRH65724 | Soybean | nucleus | 76.67 | 76.99 |
| KRH49390 | Soybean | nucleus | 76.25 | 76.57 |
| KRH00242 | Soybean | nucleus | 75.83 | 76.15 |
| AT5G05610.1 | Thale cress | nucleus | 72.5 | 72.2 |
| CDX73886 | Canola | nucleus | 72.92 | 71.43 |
| AT3G11200.1 | Thale cress | nucleus | 72.92 | 71.14 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 71.67 | 71.07 |
| GSMUA_Achr10P... | Banana | nucleus | 71.67 | 71.07 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 71.25 | 70.66 |
| CDY00726 | Canola | nucleus | 72.08 | 70.61 |
| Os07t0233300-01 | Rice | nucleus | 71.25 | 70.08 |
| Bra034860.1-P | Field mustard | nucleus | 72.08 | 70.04 |
| CDY08544 | Canola | nucleus | 72.08 | 70.04 |
| Bra034169.1-P | Field mustard | nucleus | 72.92 | 70.0 |
| CDY36305 | Canola | cytosol | 72.5 | 69.6 |
| CDY01002 | Canola | nucleus | 72.08 | 69.2 |
| CDX98851 | Canola | nucleus | 67.08 | 67.08 |
| CDX70142 | Canola | cytosol | 67.08 | 67.08 |
| Bra009121.1-P | Field mustard | nucleus | 66.67 | 66.67 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 67.92 | 66.26 |
| KRH56367 | Soybean | peroxisome | 60.42 | 65.91 |
| Bra001393.1-P | Field mustard | nucleus | 68.33 | 65.6 |
| OQU88744 | Sorghum | cytosol | 65.0 | 64.46 |
| KRH69940 | Soybean | peroxisome | 58.75 | 64.09 |
| Zm00001d005185_P001 | Maize | nucleus | 64.17 | 63.9 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 66.67 | 63.74 |
| EER90633 | Sorghum | nucleus | 66.25 | 63.6 |
| Os03t0818300-01 | Rice | nucleus | 65.42 | 63.56 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 66.25 | 63.35 |
| Zm00001d034627_P002 | Maize | nucleus | 65.42 | 62.8 |
| OQU77499 | Sorghum | nucleus | 65.0 | 61.66 |
| Zm00001d010834_P001 | Maize | nucleus | 65.0 | 61.66 |
| EES00286 | Sorghum | nucleus | 62.08 | 61.57 |
| PGSC0003DMT400047018 | Potato | nucleus | 63.33 | 61.29 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 64.17 | 59.92 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 64.17 | 59.92 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 63.75 | 59.53 |
| PGSC0003DMT400054001 | Potato | nucleus | 60.42 | 58.7 |
| PGSC0003DMT400012523 | Potato | nucleus | 62.5 | 58.37 |
| Zm00001d037537_P001 | Maize | nucleus | 61.25 | 56.98 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 67.08 | 55.9 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 61.25 | 53.45 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 26.67 | 52.89 |
| PGSC0003DMT400006365 | Potato | nucleus | 55.42 | 48.19 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 64.17 | 45.43 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 22.5 | 36.0 |
| Os05t0163100-01 | Rice | nucleus | 38.75 | 34.96 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 31.25 | 34.25 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 31.25 | 34.25 |
Protein Annotations
| EntrezGene:102580223 | MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:M1ARF3 |
| PFAM:PF00628 | PFAM:PF12165 | EnsemblPlantsGene:PGSC0003DMG400011022 | PGSC:PGSC0003DMG400011022 | EnsemblPlants:PGSC0003DMT400028638 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000295B904 |
| RefSeq:XP_006338985.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
Phd/F-box containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011022]
Coordinates
chr10:-:53902715..53908714
Molecular Weight (calculated)
27075.7 Da
IEP (calculated)
4.962
GRAVY (calculated)
-0.602
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MASISSSPRT VEEIFKDYSA RRAGILRALT NDVEEFSNTC DPEKENLCLY GHPNETWEVN LPADEVPPEL PEPALGINFA RDGMNRIDWL SLVAVHSDCW
101: LLAVAYFFGA RLNRNERKRL HSLINDLPTV FEVIAERKPI QDKPSADNGS KSRGSIQRTS DVQAKNTAKL ADESCDEDEE EHGETLCGCC DGNYNADEFW
201: IGCDICERWF HGKCVKITPA RAEGIKQYKC PACNLKRHRP
101: LLAVAYFFGA RLNRNERKRL HSLINDLPTV FEVIAERKPI QDKPSADNGS KSRGSIQRTS DVQAKNTAKL ADESCDEDEE EHGETLCGCC DGNYNADEFW
201: IGCDICERWF HGKCVKITPA RAEGIKQYKC PACNLKRHRP
001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
Arabidopsis Description
AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.