Factsheet for HORVU1Hr1G024210.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G064250.4
HORVU2Hr1G077670.3
HORVU3Hr1G090540.1
HORVU4Hr1G015060.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	HORVU1Hr1G064250.4	AT1G14510.1	21798944
AT3G11200.1	HORVU2Hr1G077670.3	AT1G14510.1	21798944
AT3G11200.1	HORVU3Hr1G090540.1	AT1G14510.1	21798944
AT3G11200.1	HORVU4Hr1G015060.3	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G111700.1	Wheat	nucleus	75.22	99.22
TraesCS1B01G129400.1	Wheat	nucleus	75.22	99.22
TraesCS1A01G110200.1	Wheat	nucleus	74.93	98.83
Zm00001d010834_P001	Maize	nucleus	64.9	86.96
OQU77499	Sorghum	nucleus	64.01	85.77
Zm00001d037537_P001	Maize	nucleus	62.24	81.78
GSMUA_Achr7P15530_001	Banana	nucleus	51.92	72.73
GSMUA_Achr10P...	Banana	nucleus	51.03	71.49
GSMUA_Achr2P18960_001	Banana	nucleus	50.15	70.25
VIT_13s0067g01000.t01	Wine grape	nucleus	48.08	67.63
KRH38049	Soybean	nucleus	47.2	67.23
KRH00242	Soybean	nucleus	46.9	66.53
KRH65724	Soybean	nucleus	46.9	66.53
KRH49390	Soybean	nucleus	46.61	66.11
Solyc09g005360.2.1	Tomato	nucleus	46.9	65.98
PGSC0003DMT400059399	Potato	nucleus	46.61	65.56
VIT_08s0105g00360.t01	Wine grape	nucleus	46.9	65.43
Solyc10g076690.1.1	Tomato	nucleus	45.72	64.58
HORVU2Hr1G052960.2	Barley	cytosol	46.61	64.23
PGSC0003DMT400049364	Potato	nucleus	45.43	64.17
PGSC0003DMT400028638	Potato	nucleus	45.43	64.17
Solyc10g085180.1.1	Tomato	nucleus	45.13	63.75
AT3G11200.1	Thale cress	nucleus	45.43	62.6
CDX73886	Canola	nucleus	45.13	62.45
CDY00726	Canola	nucleus	44.84	62.04
CDY08544	Canola	nucleus	44.54	61.13
Bra034860.1-P	Field mustard	nucleus	44.54	61.13
AT5G05610.1	Thale cress	nucleus	43.36	61.0
Bra034169.1-P	Field mustard	nucleus	44.84	60.8
CDY01002	Canola	nucleus	44.54	60.4
CDY36305	Canola	cytosol	44.54	60.4
KRH56367	Soybean	peroxisome	38.64	59.55
CDX70142	Canola	cytosol	41.89	59.17
Solyc06g051420.2.1	Tomato	nucleus	42.48	58.78
Bra009121.1-P	Field mustard	nucleus	41.59	58.75
KRH69940	Soybean	peroxisome	37.46	57.73
Bra001393.1-P	Field mustard	nucleus	42.48	57.6
CDX98851	Canola	nucleus	40.41	57.08
HORVU4Hr1G015060.3	Barley	nucleus	42.48	56.69
HORVU1Hr1G064250.4	Barley	mitochondrion, nucleus, peroxisome	41.59	53.41
Os05t0163100-01	Rice	nucleus	40.41	51.5
HORVU2Hr1G031990.2	Barley	nucleus	45.43	50.83
HORVU5Hr1G112420.6	Barley	nucleus	40.71	50.18
CDY36322	Canola	cytosol, plasma membrane, plastid	39.82	46.88
HORVU3Hr1G090540.1	Barley	nucleus	43.07	41.71
HORVU5Hr1G059130.2	Barley	nucleus	15.63	35.33
HORVU0Hr1G025310.1	Barley	plastid	15.63	31.74
HORVU2Hr1G077670.3	Barley	nucleus	32.45	30.99
HORVU7Hr1G021380.1	Barley	plastid	17.7	30.61

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	UniProt:A0A287EXW3	InterPro:Alfin	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	EnsemblPlantsGene:HORVU1Hr1G024210	EnsemblPlants:HORVU1Hr1G024210.1	InterPro:IPR013083
InterPro:IPR019787	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321
PANTHER:PTHR12321:SF37	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI000B46C05D	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr1H:+:108598601..108604330

Molecular Weight (calculated)

37822.6 Da

IEP (calculated)

8.531

GRAVY (calculated)

-0.676

Length

339 amino acids

Sequence
(BLAST)

001: PFRFLHGSGA LGPLIRRFGY LQGARRKRAN SCTSPLRSRH HPHPCILPFT CLPLSPASRS VISSQPPPPR RRSREAPAPV PAMDASYRRS GAGGGGGSAP
101: RTVEDIFKDY RARRNAIHRA LTHDVEEFYA QCDPEKENLC LYGYANEAWE VALPAEEVPT ELPEPALGIN FARDGMKRSD WLALVAVHSD SWLVSVAFYY
201: AARLTRNDRK RLFGMMNDLP TVYEVISGMR QSKERDRSGG IDNSGRNKLP SKHTVEAVPP PRAENNAREA DEGYDEDDGD HSETLCGTCG GIYSAEEFWI
301: GCDVCERWYH GKCVKITPAK AESIKQYKCP SCSSKRPRQ

Best Arabidopsis Sequence Match ( AT3G11200.1 )
(BLAST)

001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ

Arabidopsis Description

AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.