Factsheet for VIT_08s0105g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0035g01980.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	VIT_12s0035g01980.t01	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38049	Soybean	nucleus	86.01	87.82
KRH65724	Soybean	nucleus	85.6	87.03
PGSC0003DMT400059399	Potato	nucleus	85.6	86.31
KRH49390	Soybean	nucleus	83.54	84.94
KRH00242	Soybean	nucleus	82.72	84.1
PGSC0003DMT400049364	Potato	nucleus	82.3	83.33
GSMUA_Achr10P...	Banana	nucleus	80.25	80.58
VIT_13s0067g01000.t01	Wine grape	nucleus	79.84	80.5
GSMUA_Achr7P15530_001	Banana	nucleus	79.84	80.17
AT5G05610.1	Thale cress	nucleus	79.42	80.08
PGSC0003DMT400028638	Potato	nucleus	79.01	80.0
GSMUA_Achr2P18960_001	Banana	nucleus	78.19	78.51
CDX73886	Canola	nucleus	78.19	77.55
AT3G11200.1	Thale cress	nucleus	78.19	77.24
Bra034169.1-P	Field mustard	nucleus	79.01	76.8
CDY00726	Canola	nucleus	77.37	76.73
CDY36305	Canola	cytosol	78.6	76.4
CDY08544	Canola	nucleus	76.95	75.71
Bra034860.1-P	Field mustard	nucleus	76.95	75.71
CDY01002	Canola	nucleus	77.78	75.6
CDX98851	Canola	nucleus	72.43	73.33
CDX70142	Canola	cytosol	72.43	73.33
Os07t0233300-01	Rice	nucleus	73.25	72.95
Bra009121.1-P	Field mustard	nucleus	72.02	72.92
Solyc06g051420.2.1	Tomato	nucleus	72.43	71.84
Bra001393.1-P	Field mustard	nucleus	72.43	70.4
OQU88744	Sorghum	cytosol	69.96	70.25
HORVU2Hr1G052960.2	Barley	cytosol	70.78	69.92
Os03t0818300-01	Rice	nucleus	69.96	68.83
Zm00001d005185_P001	Maize	nucleus	67.49	68.05
Zm00001d034627_P002	Maize	nucleus	69.55	67.6
EER90633	Sorghum	nucleus	69.14	67.2
VIT_09s0002g01600.t01	Wine grape	nucleus	70.78	65.9
TraesCS5B01G486600.1	Wheat	nucleus	67.9	65.74
TraesCS5D01G486400.2	Wheat	nucleus	67.49	65.34
VIT_11s0016g01500.t01	Wine grape	nucleus	67.49	65.08
EES00286	Sorghum	nucleus	64.61	64.88
VIT_12s0035g01980.t01	Wine grape	nucleus	67.08	64.43
OQU77499	Sorghum	nucleus	66.26	63.64
Zm00001d010834_P001	Maize	nucleus	66.26	63.64
VIT_04s0008g01670.t01	Wine grape	nucleus	68.72	63.26
TraesCS1D01G111700.1	Wheat	nucleus	65.43	61.87
TraesCS1B01G129400.1	Wheat	nucleus	65.43	61.87
TraesCS1A01G110200.1	Wheat	nucleus	65.43	61.87
CDY36322	Canola	cytosol, plasma membrane, plastid	72.02	60.76
Zm00001d037537_P001	Maize	nucleus	62.14	58.53
HORVU5Hr1G112420.6	Barley	nucleus	62.55	55.27
OQU88643	Sorghum	extracellular, golgi, mitochondrion	26.75	53.72
VIT_11s0016g01630.t01	Wine grape	plastid	21.81	52.48
HORVU1Hr1G024210.1	Barley	nucleus	65.43	46.9
Os05t0163100-01	Rice	nucleus	40.74	37.22
HORVU5Hr1G059130.2	Barley	nucleus	21.81	35.33
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	31.69	35.16
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	31.69	35.16

Protein Annotations

EntrezGene:100259069	wikigene:100259069	MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	ProteinID:CCB47919
ProteinID:CCB47919.1	UniProt:F6H6T3	EMBL:FN595245	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	EntrezGene:LOC100259069	wikigene:LOC100259069
PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF96
SMART:SM00249	SUPFAM:SSF57903	TIGR:TC58481	UniParc:UPI00015CBD1D	ArrayExpress:VIT_08s0105g00360	EnsemblPlantsGene:VIT_08s0105g00360
EnsemblPlants:VIT_08s0105g00360.t01	unigene:Vvi.7588	RefSeq:XP_002265093	RefSeq:XP_002265093.1	RefSeq:XP_003632579	RefSeq:XP_003632579.1
RefSeq:XP_003632580	RefSeq:XP_003632580.1	RefSeq:XP_003632581	RefSeq:XP_003632581.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:7561826..7570297

Molecular Weight (calculated)

27485.3 Da

IEP (calculated)

5.268

GRAVY (calculated)

-0.631

Length

243 amino acids

Sequence
(BLAST)

001: MEMASISSSP RTVEEIFKDY SGRRAGVVRA LTYDVDEFYK LCDPEKENLC LYGHPNDTWE VTLPAEEVPP ELPEPALGIN FARDGMNRKD WLSLVAVHSD
101: SWLLSAAFYL GARLNRNERK RLFSMINDLP TVFEVVTERK PIKDKPSVDS GSKSRVSTKR GNEGQVKSTP KLAADESFEE EEDEHSETLC GSCGGNYNAD
201: EFWIGCDICE RWFHGKCVKI TPAKAESIKQ YKCPSCSLKR SRQ

Best Arabidopsis Sequence Match ( AT5G05610.1 )
(BLAST)

001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q

Arabidopsis Description

AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.