Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G083480.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | HORVU3Hr1G083480.1 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G311200.1 | Wheat | nucleus | 65.63 | 82.33 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 65.07 | 81.63 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 65.07 | 81.63 |
| CDY17594 | Canola | cytosol | 17.18 | 51.69 |
| Os04t0444900-01 | Rice | nucleus | 34.65 | 48.05 |
| KXG26388 | Sorghum | cytosol | 33.8 | 48.0 |
| Solyc01g102750.2.1 | Tomato | nucleus | 32.68 | 46.59 |
| PGSC0003DMT400047018 | Potato | nucleus | 32.39 | 46.37 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 32.68 | 45.67 |
| Solyc01g102760.2.1 | Tomato | nucleus | 31.83 | 45.56 |
| KRH01887 | Soybean | nucleus | 32.11 | 45.24 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 32.11 | 45.06 |
| KRH51269 | Soybean | nucleus | 31.83 | 45.02 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 30.7 | 44.67 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 30.7 | 44.67 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 30.7 | 44.67 |
| AT1G14510.1 | Thale cress | nucleus | 30.99 | 43.65 |
| Bra024817.1-P | Field mustard | nucleus | 30.14 | 43.5 |
| Bra026825.1-P | Field mustard | nucleus | 29.86 | 43.44 |
| CDY03049 | Canola | cytosol | 29.86 | 43.27 |
| CDY53545 | Canola | cytosol | 29.58 | 43.21 |
| CDX84026 | Canola | nucleus | 30.42 | 43.2 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 30.99 | 42.97 |
| CDX81645 | Canola | cytosol | 29.3 | 42.8 |
| CDY45267 | Canola | nucleus | 24.51 | 42.65 |
| Bra016698.1-P | Field mustard | cytosol | 29.86 | 42.4 |
| CDX96851 | Canola | cytosol | 29.86 | 42.4 |
| Zm00001d025504_P001 | Maize | nucleus | 29.58 | 42.34 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 31.27 | 42.05 |
| Bra026210.1-P | Field mustard | nucleus | 29.3 | 41.6 |
| CDY65375 | Canola | nucleus | 28.45 | 41.39 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 34.37 | 40.26 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 27.61 | 39.84 |
| CDY17593 | Canola | cytosol | 12.68 | 38.14 |
| GSMUA_Achr10P... | Banana | nucleus | 25.35 | 34.62 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 26.76 | 34.55 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 32.11 | 32.57 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 30.99 | 32.45 |
| Zm00001d025491_P002 | Maize | nucleus | 32.11 | 31.32 |
| HORVU0Hr1G025310.1 | Barley | plastid | 11.55 | 24.55 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 10.14 | 24.0 |
| HORVU7Hr1G021380.1 | Barley | plastid | 12.96 | 23.47 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | UniProt:A0A287IJI5 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:HORVU2Hr1G077670 | EnsemblPlants:HORVU2Hr1G077670.3 | InterPro:IPR013083 |
| InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000B4611EF | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr2H:+:562094670..562106564
Molecular Weight (calculated)
39110.4 Da
IEP (calculated)
7.404
GRAVY (calculated)
-0.508
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: KKTGGFRDLH PAHFASVQNL KLQLSCEGTN PASLLLPIAQ VESPPPPPPK PYLRRAACWA AAMAEDAFSP AIHPNLHGPE HVFRQYCGRR AGIVKALTEG
101: RXXXYEQCDP DKKALCLFGL PDGTWEVNQL PEEVPVQIPE PVCGINFARD ITPKKVWLSI VAVHSDAWLM SIAFYHAGRV SFDRDGREQL FKLINRLPTV
201: YEAVKGSYER QAQTPNSSRK NKSSSQPPNQ ITSNCKPVTP ALPMLKQENY ADFNSWAVTA NWPTMLKEED DGGKEGGGGE DQAMSKCAGC EEIYSANDGH
301: LWIGCDHCQR WFHGKCVRVT TEMADRIENY MCPSCSYKAR MKPSDSAVPM KAFDS
101: RXXXYEQCDP DKKALCLFGL PDGTWEVNQL PEEVPVQIPE PVCGINFARD ITPKKVWLSI VAVHSDAWLM SIAFYHAGRV SFDRDGREQL FKLINRLPTV
201: YEAVKGSYER QAQTPNSSRK NKSSSQPPNQ ITSNCKPVTP ALPMLKQENY ADFNSWAVTA NWPTMLKEED DGGKEGGGGE DQAMSKCAGC EEIYSANDGH
301: LWIGCDHCQR WFHGKCVRVT TEMADRIENY MCPSCSYKAR MKPSDSAVPM KAFDS
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.