Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr6P30890_001 | |
GSMUA_Achr7P16220_001 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G02470.1 | GSMUA_Achr6P30890_001 | AT4G30860.1 | 21798944 |
AT2G02470.1 | GSMUA_Achr7P16220_001 | AT4G30860.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_AchrUn_... | Banana | cytosol | 42.06 | 87.6 |
CDY17594 | Canola | cytosol | 38.1 | 81.36 |
GSMUA_Achr7P02940_001 | Banana | nucleus | 80.95 | 80.63 |
GSMUA_Achr8P32300_001 | Banana | nucleus | 80.16 | 78.91 |
GSMUA_Achr6P28820_001 | Banana | nucleus | 78.57 | 78.26 |
GSMUA_Achr10P... | Banana | nucleus | 78.17 | 77.56 |
GSMUA_Achr2P05660_001 | Banana | nucleus | 76.98 | 76.68 |
GSMUA_Achr3P16750_001 | Banana | nucleus | 76.59 | 76.28 |
KRH01887 | Soybean | nucleus | 73.81 | 73.81 |
GSMUA_AchrUn_... | Banana | plastid | 37.3 | 73.44 |
KRH51269 | Soybean | nucleus | 73.02 | 73.31 |
Solyc01g102760.2.1 | Tomato | nucleus | 71.43 | 72.58 |
VIT_12s0035g01980.t01 | Wine grape | nucleus | 72.62 | 72.33 |
PGSC0003DMT400047018 | Potato | nucleus | 70.24 | 71.37 |
GSMUA_Achr8P30680_001 | Banana | nucleus | 71.03 | 71.31 |
Solyc01g102750.2.1 | Tomato | nucleus | 69.84 | 70.68 |
Bra024817.1-P | Field mustard | nucleus | 68.65 | 70.33 |
CDY17436 | Canola | cytosol, nucleus, plastid | 67.86 | 70.08 |
CDY04130 | Canola | cytosol, nucleus, plastid | 67.86 | 70.08 |
Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 67.86 | 70.08 |
CDY03049 | Canola | cytosol | 67.86 | 69.8 |
AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 69.05 | 67.97 |
AT1G14510.1 | Thale cress | nucleus | 67.46 | 67.46 |
CDX84026 | Canola | nucleus | 65.87 | 66.4 |
CDX81645 | Canola | cytosol | 63.89 | 66.26 |
CDY53545 | Canola | cytosol | 63.49 | 65.84 |
Bra016698.1-P | Field mustard | cytosol | 65.08 | 65.6 |
CDX96851 | Canola | cytosol | 65.08 | 65.6 |
CDY17593 | Canola | cytosol | 30.56 | 65.25 |
Bra026825.1-P | Field mustard | nucleus | 63.1 | 65.16 |
CDY65375 | Canola | nucleus | 61.9 | 63.93 |
GSMUA_Achr2P18960_001 | Banana | nucleus | 60.32 | 62.81 |
Bra026210.1-P | Field mustard | nucleus | 62.3 | 62.8 |
GSMUA_Achr10P... | Banana | nucleus | 59.52 | 61.98 |
CDY45267 | Canola | nucleus | 50.0 | 61.76 |
GSMUA_Achr7P15530_001 | Banana | nucleus | 59.13 | 61.57 |
GSMUA_Achr10P... | Banana | nucleus | 58.33 | 58.33 |
GSMUA_Achr10P... | Banana | nucleus | 46.03 | 50.88 |
GSMUA_Achr10P... | Banana | cytosol | 29.37 | 49.33 |
GSMUA_Achr10P... | Banana | cytosol | 35.32 | 49.17 |
GSMUA_Achr10P... | Banana | nucleus | 48.41 | 46.92 |
GSMUA_AchrUn_... | Banana | nucleus | 53.97 | 45.03 |
GSMUA_Achr10P... | Banana | nucleus | 9.52 | 42.86 |
GSMUA_Achr10P... | Banana | cytosol | 30.16 | 39.79 |
GSMUA_Achr10P... | Banana | cytosol | 28.97 | 37.82 |
GSMUA_Achr10P... | Banana | extracellular | 21.03 | 36.81 |
Protein Annotations
MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr11G26440_001 | EnsemblPlants:GSMUA_Achr11P26440_001 | EnsemblPlants:GSMUA_Achr11T26440_001 | InterPro:IPR013083 |
InterPro:IPR019787 | UniProt:M0RVM4 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000294BF5C | InterPro:Zinc_finger_PHD-type_CS |
InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr11G26440_001]
Coordinates
chr11:-:25247876..25253544
Molecular Weight (calculated)
28722.5 Da
IEP (calculated)
5.136
GRAVY (calculated)
-0.851
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEDEVARVS RTPEEVFRDF RGRRAGMIKA LTTDVDKFYQ QCDPEKENLC LYGFPNETWE VNLPAEEVPP ELPEPALGIN FARDGMAEKD WLSLVAVHSD
101: AWLLAVAFYF GARFGFDKES RRQLHNMINN LPTIYEVVTG TVKQQSREKN PNGTSKSNKS SSKKAEPQKP SKMPPSKEED GSRVEDAEEN EEHENTLCGA
201: CGDNYANDEF WICCDMCEKW FHGKCVRITP ARAEHIKQYK CPSCSNNKRG RA
101: AWLLAVAFYF GARFGFDKES RRQLHNMINN LPTIYEVVTG TVKQQSREKN PNGTSKSNKS SSKKAEPQKP SKMPPSKEED GSRVEDAEEN EEHENTLCGA
201: CGDNYANDEF WICCDMCEKW FHGKCVRITP ARAEHIKQYK CPSCSNNKRG RA
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.