Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51845 | Canola | cytosol | 23.51 | 84.29 |
| Bra006562.1-P | Field mustard | cytosol | 23.51 | 84.29 |
| KRH71913 | Soybean | cytosol | 31.08 | 82.11 |
| GSMUA_AchrUn_... | Banana | cytosol | 39.44 | 81.82 |
| AT3G42790.1 | Thale cress | nucleus | 75.3 | 75.6 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 75.3 | 74.7 |
| GSMUA_Achr10P... | Banana | nucleus | 75.3 | 74.41 |
| AT5G26210.1 | Thale cress | nucleus | 75.3 | 74.12 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 74.1 | 73.52 |
| CDY16540 | Canola | cytosol | 76.49 | 73.28 |
| CDY52629 | Canola | nucleus | 76.1 | 73.18 |
| Bra036568.1-P | Field mustard | cytosol | 74.9 | 73.15 |
| CDY19781 | Canola | cytosol | 74.9 | 73.15 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 73.71 | 73.12 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 73.71 | 73.12 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 74.5 | 73.05 |
| Bra020107.1-P | Field mustard | cytosol | 73.71 | 72.83 |
| CDY70751 | Canola | cytosol | 73.71 | 72.83 |
| CDX88221 | Canola | nucleus | 75.7 | 72.8 |
| Bra009887.1-P | Field mustard | nucleus | 75.7 | 72.8 |
| CDX87061 | Canola | cytosol | 74.5 | 72.76 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 74.5 | 72.76 |
| AT5G20510.1 | Thale cress | cytosol | 74.9 | 72.31 |
| Bra034950.1-P | Field mustard | nucleus | 72.51 | 71.65 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 72.51 | 71.65 |
| GSMUA_Achr11P... | Banana | nucleus | 71.31 | 71.03 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 71.71 | 70.87 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 70.52 | 70.8 |
| Bra020543.1-P | Field mustard | cytosol, nucleus, plastid | 71.31 | 70.47 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 71.31 | 70.47 |
| Bra002307.1-P | Field mustard | nucleus | 75.7 | 67.38 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 62.55 | 64.88 |
| GSMUA_Achr10P... | Banana | nucleus | 62.15 | 64.46 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 62.15 | 64.46 |
| GSMUA_AchrUn_... | Banana | plastid | 32.67 | 64.06 |
| GSMUA_Achr10P... | Banana | nucleus | 61.75 | 61.51 |
| GSMUA_Achr10P... | Banana | nucleus | 50.2 | 55.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.96 | 49.01 |
| GSMUA_Achr10P... | Banana | cytosol | 35.06 | 48.62 |
| GSMUA_Achr10P... | Banana | cytosol | 28.69 | 48.0 |
| GSMUA_Achr10P... | Banana | nucleus | 47.41 | 45.77 |
| GSMUA_Achr10P... | Banana | nucleus | 9.56 | 42.86 |
| GSMUA_Achr10P... | Banana | cytosol | 29.08 | 38.22 |
| GSMUA_Achr10P... | Banana | cytosol | 29.08 | 37.82 |
| GSMUA_Achr10P... | Banana | extracellular | 19.52 | 34.03 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr8G30680_001 | EnsemblPlants:GSMUA_Achr8P30680_001 | EnsemblPlants:GSMUA_Achr8T30680_001 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M0TV20 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000294999A | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr8G30680_001]
Coordinates
chr8:-:32624522..32628699
Molecular Weight (calculated)
28667.4 Da
IEP (calculated)
4.910
GRAVY (calculated)
-0.769
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGSAGHYN PRTVEEVFRD FKGRRAAMIK ALTTDVEDFY QQCDPEKENL CLYGFPNERW EVNLPAEEVP PELPEPALGI NFARDGMQEK DWLSLVAVHS
101: DAWILSVAFY FGARFGFDKV ERKRLFGMIN DLPTIFEVVN GKNKVRTSET NHSNNKSKSN TKVRVSDSHP KYLKGQPKEE DDELDEDDEE EHGDTLCGAC
201: GDNYASDEFW ICCDICETWF HGKCVKITPA RAEHIKQYKC PSCSNKRPRP S
101: DAWILSVAFY FGARFGFDKV ERKRLFGMIN DLPTIFEVVN GKNKVRTSET NHSNNKSKSN TKVRVSDSHP KYLKGQPKEE DDELDEDDEE EHGDTLCGAC
201: GDNYASDEFW ICCDICETWF HGKCVKITPA RAEHIKQYKC PSCSNKRPRP S
001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
Arabidopsis Description
AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.