Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05535 | Canola | cytosol, nucleus, plastid | 94.4 | 92.91 |
| CDX87061 | Canola | cytosol | 85.2 | 82.88 |
| CDY19781 | Canola | cytosol | 85.2 | 82.88 |
| CDY52629 | Canola | nucleus | 85.2 | 81.61 |
| CDX88221 | Canola | nucleus | 85.2 | 81.61 |
| AT5G26210.1 | Thale cress | nucleus | 83.2 | 81.57 |
| VIT_11s0016g01500.t01 | Wine grape | nucleus | 80.4 | 79.76 |
| CDY51845 | Canola | cytosol | 22.0 | 78.57 |
| CDY17594 | Canola | cytosol | 35.2 | 74.58 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 70.8 | 70.52 |
| CDY70751 | Canola | cytosol | 71.2 | 70.08 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 70.4 | 68.48 |
| CDY16540 | Canola | cytosol | 70.8 | 67.56 |
| VIT_11s0016g01630.t01 | Wine grape | plastid | 26.8 | 66.34 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 66.8 | 65.75 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 66.0 | 64.96 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 63.2 | 64.75 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 63.2 | 64.75 |
| TraesCS2B01G198500.2 | Wheat | nucleus | 69.6 | 63.74 |
| TraesCS2A01G172100.2 | Wheat | nucleus | 69.6 | 63.74 |
| TraesCS2D01G179400.2 | Wheat | nucleus | 69.6 | 63.74 |
| CDY03049 | Canola | cytosol | 61.6 | 62.86 |
| CDX84026 | Canola | nucleus | 62.8 | 62.8 |
| Os07t0608400-01 | Rice | nucleus | 69.6 | 62.59 |
| CDY45267 | Canola | nucleus | 50.8 | 62.25 |
| CDX96851 | Canola | cytosol | 62.0 | 62.0 |
| CDY65375 | Canola | nucleus | 59.6 | 61.07 |
| CDX81645 | Canola | cytosol | 59.2 | 60.91 |
| CDY53545 | Canola | cytosol | 58.8 | 60.49 |
| EER97523 | Sorghum | nucleus | 64.0 | 59.48 |
| CDX73886 | Canola | nucleus | 58.0 | 59.18 |
| CDY00726 | Canola | nucleus | 57.6 | 58.78 |
| CDY08544 | Canola | nucleus | 57.6 | 58.3 |
| CDY01002 | Canola | nucleus | 57.6 | 57.6 |
| CDY36305 | Canola | cytosol | 57.2 | 57.2 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 69.2 | 57.1 |
| CDY17593 | Canola | cytosol | 26.8 | 56.78 |
| CDX70142 | Canola | cytosol | 54.4 | 56.67 |
| CDX98851 | Canola | nucleus | 54.0 | 56.25 |
| Zm00001d022110_P002 | Maize | nucleus | 63.6 | 50.48 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 52.0 | 45.14 |
| CDX80967 | Canola | mitochondrion | 26.4 | 36.46 |
| CDY11330 | Canola | mitochondrion | 26.4 | 35.87 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 30.4 | 34.7 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 30.4 | 34.7 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:A0A078GK58 | UniProt:A0A078GK58 | InterPro:Alfin | EnsemblPlants:CDY24988 |
| ProteinID:CDY24988 | ProteinID:CDY24988.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00028794001 | InterPro:IPR013083 |
| InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | TMHMM:TMhelix | UniParc:UPI0001E2492B | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
BnaC02g40200DBnaC02g40200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK58]
Coordinates
chrLK032167:+:56781..58843
Molecular Weight (calculated)
28251.7 Da
IEP (calculated)
4.514
GRAVY (calculated)
-0.752
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGDGAYNPR TVEEVFRDYN GRRNGMIKAL TTDVHEFHRL CDPEKENLCL YGLPSEDWEV NLPAEEVPPE LPEPVLGINF ARNGMLEKDW LSLVAVHSDA
101: WLMAVAFFFG ARFGFDKADR KRLFNMVNDL PSVFEVVVDF AAKKQSKEKS SVSNNSSNRS KSNSKRGGSE AGPEPKEEEV EEEESDDDEE EGDTECGACG
201: ETYAPDEFWI CCDMCENWFH GKCVKITPAR AEHIKQYKCP SCSNNKRGRS
101: WLMAVAFFFG ARFGFDKADR KRLFNMVNDL PSVFEVVVDF AAKKQSKEKS SVSNNSSNRS KSNSKRGGSE AGPEPKEEEV EEEESDDDEE EGDTECGACG
201: ETYAPDEFWI CCDMCENWFH GKCVKITPAR AEHIKQYKCP SCSNNKRGRS
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.