Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12340 | Canola | cytosol, nucleus, plastid | 98.43 | 98.43 |
| AT3G42790.1 | Thale cress | nucleus | 81.1 | 82.4 |
| CDY70751 | Canola | cytosol | 77.56 | 77.56 |
| CDY51845 | Canola | cytosol | 21.26 | 77.14 |
| CDY17594 | Canola | cytosol | 35.83 | 77.12 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 77.17 | 76.26 |
| CDY16540 | Canola | cytosol | 78.35 | 75.95 |
| VIT_11s0016g01500.t01 | Wine grape | nucleus | 74.41 | 75.0 |
| KRH71913 | Soybean | cytosol | 27.95 | 74.74 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 70.87 | 71.71 |
| CDX87061 | Canola | cytosol | 70.87 | 70.04 |
| CDY19781 | Canola | cytosol | 70.87 | 70.04 |
| CDY52629 | Canola | nucleus | 71.65 | 69.73 |
| CDX88221 | Canola | nucleus | 71.26 | 69.35 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 64.96 | 67.62 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 64.96 | 67.62 |
| CDY03049 | Canola | cytosol | 63.78 | 66.12 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 64.96 | 66.0 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 64.96 | 64.96 |
| CDX84026 | Canola | nucleus | 63.78 | 64.8 |
| Os07t0608400-01 | Rice | nucleus | 70.87 | 64.75 |
| CDX96851 | Canola | cytosol | 63.39 | 64.4 |
| CDY53545 | Canola | cytosol | 61.42 | 64.2 |
| CDX81645 | Canola | cytosol | 61.02 | 63.79 |
| CDX73886 | Canola | nucleus | 60.24 | 62.45 |
| CDY00726 | Canola | nucleus | 60.24 | 62.45 |
| CDY36305 | Canola | cytosol | 61.02 | 62.0 |
| CDY08544 | Canola | nucleus | 60.24 | 61.94 |
| TraesCS2D01G179400.2 | Wheat | nucleus | 66.14 | 61.54 |
| TraesCS2B01G198500.2 | Wheat | nucleus | 66.14 | 61.54 |
| TraesCS2A01G172100.2 | Wheat | nucleus | 66.14 | 61.54 |
| CDY01002 | Canola | nucleus | 60.24 | 61.2 |
| VIT_11s0016g01630.t01 | Wine grape | plastid | 24.02 | 60.4 |
| CDY65375 | Canola | nucleus | 57.87 | 60.25 |
| EER97523 | Sorghum | nucleus | 63.78 | 60.22 |
| CDY17593 | Canola | cytosol | 27.56 | 59.32 |
| CDY45267 | Canola | nucleus | 47.64 | 59.31 |
| CDX70142 | Canola | cytosol | 55.91 | 59.17 |
| CDX98851 | Canola | nucleus | 55.51 | 58.75 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 65.35 | 54.79 |
| Zm00001d022110_P002 | Maize | nucleus | 63.39 | 51.11 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 55.12 | 48.61 |
| CDY11330 | Canola | mitochondrion | 25.59 | 35.33 |
| CDX80967 | Canola | mitochondrion | 24.41 | 34.25 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 28.74 | 33.33 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 28.74 | 33.33 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:A0A078DG53 | InterPro:Alfin | EnsemblPlants:CDX87962 | ProteinID:CDX87962 |
| ProteinID:CDX87962.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | EnsemblPlantsGene:GSBRNA2T00147275001 |
| InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0004EAEDC5 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
BnaC03g54340D
Coordinates
chrLK031853:+:612924..614538
Molecular Weight (calculated)
28186.8 Da
IEP (calculated)
4.617
GRAVY (calculated)
-0.626
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGAGLSNP RTVEEVFRDF KGRRAAIVKA LTSDVGEFYQ QCDPEKENLC LYGLPNEQWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: TWLLSVSFYF GSRFAFDKAD RKRLFDMING VPTIFEVVTG NMKKQTKEKS SAANRNGNLS KSDSKVISSD GKNSKAMQAN NEEDGSEEED EDEHGETLCG
201: ACGDGDGTGT DDFWICCDVC EVWFHGKCVK ITPARAEHIK QYKCPACSNK RARP
101: TWLLSVSFYF GSRFAFDKAD RKRLFDMING VPTIFEVVTG NMKKQTKEKS SAANRNGNLS KSDSKVISSD GKNSKAMQAN NEEDGSEEED EDEHGETLCG
201: ACGDGDGTGT DDFWICCDVC EVWFHGKCVK ITPARAEHIK QYKCPACSNK RARP
001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
Arabidopsis Description
AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.