Factsheet for Bra009887.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88221	Canola	nucleus	100.0	100.0
Bra036568.1-P	Field mustard	cytosol	93.49	94.94
AT5G26210.1	Thale cress	nucleus	90.04	92.16
VIT_11s0016g01500.t01	Wine grape	nucleus	80.84	83.73
Bra020543.1-P	Field mustard	cytosol, nucleus, plastid	81.23	83.46
Bra006562.1-P	Field mustard	cytosol	21.46	80.0
GSMUA_Achr8P30680_001	Banana	nucleus	72.8	75.7
Bra020107.1-P	Field mustard	cytosol	73.18	75.2
Bra034950.1-P	Field mustard	nucleus	70.11	72.05
Bra017415.1-P	Field mustard	cytosol, nucleus, plastid	65.13	69.67
VIT_11s0016g01630.t01	Wine grape	plastid	26.82	69.31
Os07t0608400-01	Rice	nucleus	73.56	69.06
Bra002307.1-P	Field mustard	nucleus	73.95	68.44
Bra024817.1-P	Field mustard	nucleus	64.37	68.29
Bra016698.1-P	Field mustard	cytosol	64.37	67.2
TraesCS2D01G179400.2	Wheat	nucleus	70.11	67.03
TraesCS2B01G198500.2	Wheat	nucleus	70.11	67.03
TraesCS2A01G172100.2	Wheat	nucleus	70.11	67.03
EER97523	Sorghum	nucleus	67.82	65.8
Bra026825.1-P	Field mustard	nucleus	60.54	64.75
Bra026210.1-P	Field mustard	nucleus	60.54	63.2
Bra034860.1-P	Field mustard	nucleus	56.7	59.92
Bra034169.1-P	Field mustard	nucleus	57.09	59.6
HORVU2Hr1G031990.2	Barley	nucleus	68.97	59.41
Bra009121.1-P	Field mustard	nucleus	54.41	59.17
Bra001393.1-P	Field mustard	nucleus	53.64	56.0
Zm00001d022110_P002	Maize	nucleus	67.43	55.87
Bra005861.1-P	Field mustard	mitochondrion	26.82	38.46
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	28.74	34.25
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	28.74	34.25

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	EnsemblPlantsGene:Bra009887	EnsemblPlants:Bra009887.1	EnsemblPlants:Bra009887.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	UniProt:M4D089	PFAM:PF00628
PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	SMART:SM00249
SUPFAM:SSF57903	TMHMM:TMhelix	UniParc:UPI000253F3C2	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT5G26210 (E=9e-089) AL4 | AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding

Coordinates

chrA06:-:17893616..17895591

Molecular Weight (calculated)

29385.1 Da

IEP (calculated)

4.633

GRAVY (calculated)

-0.836

Length

261 amino acids

Sequence
(BLAST)

001: MDGGGDGGGA AYNPRTVEEV YRDFKGRRNG MIKALTTDVQ EFYRLCDPEK ENLCLYGHPN EHWEVNLPAE EVPPELPEPV LGINFARDGM MEKDWLSLVA
101: VHSDAWLLAV AFFFGARFGF DKADRKRLFN MMNDLPSIFE VVAGTAKKAS KEKSSVSNNS SNRSKSNSKR GSEPKPKYSK PEPKDEEEEE GVEEEDEDDD
201: DEQGETQCGA CGESYAADEF WICCDLCENW FHGKCVKITP ARAEHIKQYK CPSCSNKRAR S

Best Arabidopsis Sequence Match ( AT5G26210.1 )
(BLAST)

001: MEAGGAYNPR TVEEVFRDFK GRRAGMIKAL TTDVQEFFRL CDPEKENLCL YGHPNEHWEV NLPAEEVPPE LPEPVLGINF ARDGMAEKDW LSLVAVHSDA
101: WLLAVAFFFG ARFGFDKADR KRLFNMVNDL PTIFEVVAGT AKKQGKDKSS VSNNSSNRSK SSSKRGSESR AKFSKPEPKD DEEEEEEGVE EEDEDEQGET
201: QCGACGESYA ADEFWICCDL CEMWFHGKCV KITPARAEHI KQYKCPSCSN KRARS

Arabidopsis Description

AL4AL4 [Source:UniProtKB/TrEMBL;Acc:A0A178U9E8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.