Factsheet for Bra036568.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19781	Canola	cytosol	100.0	100.0
CDX87061	Canola	cytosol	99.22	99.22
Bra009887.1-P	Field mustard	nucleus	94.94	93.49
AT5G26210.1	Thale cress	nucleus	90.66	91.37
Bra020543.1-P	Field mustard	cytosol, nucleus, plastid	82.88	83.86
VIT_11s0016g01500.t01	Wine grape	nucleus	81.32	82.94
Bra006562.1-P	Field mustard	cytosol	21.4	78.57
GSMUA_Achr8P30680_001	Banana	nucleus	73.15	74.9
Bra020107.1-P	Field mustard	cytosol	73.15	74.02
Bra034950.1-P	Field mustard	nucleus	70.82	71.65
Bra017415.1-P	Field mustard	cytosol, nucleus, plastid	66.54	70.08
Os07t0608400-01	Rice	nucleus	75.1	69.42
Bra024817.1-P	Field mustard	nucleus	65.76	68.7
Bra016698.1-P	Field mustard	cytosol	64.98	66.8
Bra002307.1-P	Field mustard	nucleus	73.15	66.67
TraesCS2A01G172100.2	Wheat	nucleus	70.82	66.67
TraesCS2B01G198500.2	Wheat	nucleus	70.82	66.67
TraesCS2D01G179400.2	Wheat	nucleus	70.82	66.67
VIT_11s0016g01630.t01	Wine grape	plastid	26.07	66.34
EER97523	Sorghum	nucleus	68.87	65.8
Bra026825.1-P	Field mustard	nucleus	61.09	64.34
Bra026210.1-P	Field mustard	nucleus	60.7	62.4
Bra034860.1-P	Field mustard	nucleus	58.75	61.13
Bra034169.1-P	Field mustard	nucleus	58.75	60.4
Bra009121.1-P	Field mustard	nucleus	56.03	60.0
HORVU2Hr1G031990.2	Barley	nucleus	69.65	59.08
Bra001393.1-P	Field mustard	nucleus	55.64	57.2
Zm00001d022110_P002	Maize	nucleus	68.09	55.56
Bra005861.1-P	Field mustard	mitochondrion	27.63	39.01
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	28.79	33.79
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	28.79	33.79

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	EnsemblPlantsGene:Bra036568	EnsemblPlants:Bra036568.1	EnsemblPlants:Bra036568.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	UniProt:M4F659
PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98
SMART:SM00249	SUPFAM:SSF57903	TMHMM:TMhelix	UniParc:UPI0002541CFA	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT5G26210 (E=1e-093) AL4 | AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding

Coordinates

chrA09:-:1795500..1797059

Molecular Weight (calculated)

29162.9 Da

IEP (calculated)

4.602

GRAVY (calculated)

-0.846

Length

257 amino acids

Sequence
(BLAST)

001: MDGGGAYNPR TVEEVFRDFK GRRSGMIKAL TSDVQEFYRL CDPEKENLCL YGRPDEHWEV NLPAEEVPPE LPEPVLGINF ARDGMQEKDW LSLVAVHSDA
101: WLLAVAFFFG ARFGFDKADR KRLFNMMNDL PSIFEVVAGT AKKPSKEKSS VSNNSSNRSK SNSKRGSEPR PKLTKPEPKD EEEEEEEGVE EEEDEDDEQG
201: ETQCGACGES YAADEFWICC DLCENWFHGK CVKITPARAE HIKQYKCPSC SNKRARS

Best Arabidopsis Sequence Match ( AT5G26210.1 )
(BLAST)

001: MEAGGAYNPR TVEEVFRDFK GRRAGMIKAL TTDVQEFFRL CDPEKENLCL YGHPNEHWEV NLPAEEVPPE LPEPVLGINF ARDGMAEKDW LSLVAVHSDA
101: WLLAVAFFFG ARFGFDKADR KRLFNMVNDL PTIFEVVAGT AKKQGKDKSS VSNNSSNRSK SSSKRGSESR AKFSKPEPKD DEEEEEEGVE EEDEDEQGET
201: QCGACGESYA ADEFWICCDL CEMWFHGKCV KITPARAEHI KQYKCPSCSN KRARS

Arabidopsis Description

AL4AL4 [Source:UniProtKB/TrEMBL;Acc:A0A178U9E8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.