Factsheet for Bra020107.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70751	Canola	cytosol	100.0	100.0
Bra006562.1-P	Field mustard	cytosol	24.41	88.57
AT5G20510.1	Thale cress	cytosol	86.22	84.23
VIT_11s0016g01500.t01	Wine grape	nucleus	79.53	80.16
Bra002307.1-P	Field mustard	nucleus	87.8	79.08
Bra034950.1-P	Field mustard	nucleus	77.56	77.56
KRH71913	Soybean	cytosol	28.35	75.79
GSMUA_Achr8P30680_001	Banana	nucleus	72.83	73.71
Bra009887.1-P	Field mustard	nucleus	75.2	73.18
Bra036568.1-P	Field mustard	cytosol	74.02	73.15
Bra020543.1-P	Field mustard	cytosol, nucleus, plastid	68.9	68.9
Bra024817.1-P	Field mustard	nucleus	64.96	67.07
Bra016698.1-P	Field mustard	cytosol	65.35	66.4
Bra017415.1-P	Field mustard	cytosol, nucleus, plastid	63.78	66.39
TraesCS2D01G179400.2	Wheat	nucleus	71.26	66.3
TraesCS2B01G198500.2	Wheat	nucleus	71.26	66.3
TraesCS2A01G172100.2	Wheat	nucleus	71.26	66.3
Os07t0608400-01	Rice	nucleus	72.44	66.19
EER97523	Sorghum	nucleus	69.29	65.43
Bra026825.1-P	Field mustard	nucleus	61.42	63.93
VIT_11s0016g01630.t01	Wine grape	plastid	25.2	63.37
Bra034860.1-P	Field mustard	nucleus	60.24	61.94
Bra034169.1-P	Field mustard	nucleus	60.63	61.6
HORVU2Hr1G031990.2	Barley	nucleus	70.87	59.41
Bra026210.1-P	Field mustard	nucleus	58.27	59.2
Bra009121.1-P	Field mustard	nucleus	55.91	59.17
Bra001393.1-P	Field mustard	nucleus	56.3	57.2
Zm00001d022110_P002	Maize	nucleus	69.29	55.87
Bra005861.1-P	Field mustard	mitochondrion	25.98	36.26
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	29.13	33.79
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	29.13	33.79

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	EnsemblPlantsGene:Bra020107	EnsemblPlants:Bra020107.1	EnsemblPlants:Bra020107.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083
InterPro:IPR019787	UniProt:M4DUB4	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016
PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI0002543366	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT5G20510 (E=2e-095) AL5 | AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding

Coordinates

chrA02:-:5069947..5071625

Molecular Weight (calculated)

28921.7 Da

IEP (calculated)

4.726

GRAVY (calculated)

-0.725

Length

254 amino acids

Sequence
(BLAST)

001: MEGGGGARYN PRTVEEVFRD FKGRRAGILR ALTTDVKEFF QQCNPEKDNL CLYGFPNEVW EVNLPAEEVP PELPEPALGI NFARDGMQEK EWISLVAVHS
101: DAWLLSVSFY FGSRFGFDKA DRKRLFNMIN EVPTVFEVVT GSAKKQTEEQ PSSVNRNGNR SKSNSKVRDL EVKSSRTIEV NDEEEGVEEE EEDEEEHGET
201: LCGACGDNYA SDFWICCDMC EKWFHGKCVK ITPARAEHIK QYKCPSCSNK RARP

Best Arabidopsis Sequence Match ( AT5G20510.1 )
(BLAST)

001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP

Arabidopsis Description

AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.