Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 86.0 | 66.84 |
| GSMUA_AchrUn_... | Banana | cytosol | 46.0 | 57.02 |
| GSMUA_Achr10P... | Banana | cytosol | 61.33 | 50.83 |
| GSMUA_Achr10P... | Banana | cytosol | 61.33 | 48.17 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 50.0 | 29.64 |
| GSMUA_Achr11P... | Banana | nucleus | 49.33 | 29.37 |
| GSMUA_Achr10P... | Banana | nucleus | 49.33 | 29.13 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 48.0 | 28.69 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 48.0 | 28.12 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 47.33 | 28.06 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 47.33 | 28.06 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 46.67 | 27.67 |
| CDX80967 | Canola | mitochondrion | 32.67 | 27.07 |
| GSMUA_Achr10P... | Banana | nucleus | 46.67 | 26.92 |
| Bra005861.1-P | Field mustard | mitochondrion | 32.0 | 26.37 |
| CDY11330 | Canola | mitochondrion | 32.0 | 26.09 |
| GSMUA_Achr10P... | Banana | nucleus | 38.67 | 25.44 |
| GSMUA_Achr10P... | Banana | nucleus | 40.67 | 25.21 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 40.67 | 25.21 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 40.67 | 25.21 |
| GSMUA_Achr10P... | Banana | nucleus | 41.33 | 24.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.0 | 19.87 |
| Os01t0158800-00 | Rice | plastid | 27.33 | 17.23 |
| GSMUA_Achr10P... | Banana | extracellular | 4.67 | 4.86 |
| GSMUA_AchrUn_... | Banana | plastid | 2.0 | 2.34 |
| GSMUA_Achr10P... | Banana | nucleus | 0.67 | 1.79 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P04360_001 | EnsemblPlants:GSMUA_Achr10T04360_001 | EnsemblPlantsGene:GSMUA_Achr10G04360_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | InterPro:Alfin | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | PFAM:PF12165 | UniParc:UPI000295FE69 |
| UniProt:M0RFB3 | MapMan:15.5.8 | : | : | : | : |
Description
PHD finger protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G04360_001]
Coordinates
chr10:+:14040127..14041223
Molecular Weight (calculated)
17563.0 Da
IEP (calculated)
5.237
GRAVY (calculated)
-0.283
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRAPMDLNE RPITSWTIDM LFRDFLGRRA GLIKALTTDF IKFYEQCDPE KPYMCLYGYP NETWEVKEAP VVPHEFPEPS LGVNFAKDEM KLKDWIAHIA
101: IHSDIWIYSY AFYIAARSGF DNETRYGKFD LIYESPPCCP SLKICASIYH
101: IHSDIWIYSY AFYIAARSGF DNETRYGKFD LIYESPPCCP SLKICASIYH
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKVSLLFHHF VLSISAKFYL FVFLTNSLAN PNLSQRLQRC
201: HLHRQKKKKK KKMRVKMRVK TMNKVRFVVL VETTTVQMSS GFAATRVRNG SMENV
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKVSLLFHHF VLSISAKFYL FVFLTNSLAN PNLSQRLQRC
201: HLHRQKKKKK KKMRVKMRVK TMNKVRFVVL VETTTVQMSS GFAATRVRNG SMENV
Arabidopsis Description
AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.