CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19253	Soybean	nucleus	90.73	89.64
VIT_11s0016g01500.t01	Wine grape	nucleus	89.52	88.1
KRH02655	Soybean	nucleus	89.11	87.7
KRH06119	Soybean	nucleus	85.48	83.79
KRH15616	Soybean	nucleus	86.29	83.59
KRH47546	Soybean	nucleus	85.08	83.4
KRH71913	Soybean	cytosol	31.85	83.16
KRH23260	Soybean	nucleus	78.23	78.86
KRH10063	Soybean	nucleus	78.63	78.63
KRH51269	Soybean	nucleus	75.4	74.5
KRH01887	Soybean	nucleus	75.4	74.21
KRH05401	Soybean	endoplasmic reticulum, nucleus, plastid	72.98	72.98
KRH26115	Soybean	endoplasmic reticulum, extracellular	25.81	72.73
Os07t0608400-01	Rice	nucleus	79.44	70.86
TraesCS2D01G179400.2	Wheat	nucleus	75.4	68.5
TraesCS2B01G198500.2	Wheat	nucleus	75.4	68.5
TraesCS2A01G172100.2	Wheat	nucleus	75.4	68.5
KRH00242	Soybean	nucleus	64.52	66.95
KRH49390	Soybean	nucleus	64.52	66.95
KRH38049	Soybean	nucleus	63.71	66.39
KRH65724	Soybean	nucleus	63.71	66.11
EER97523	Sorghum	nucleus	71.37	65.8
GSMUA_Achr10P...	Banana	nucleus	64.11	63.1
HORVU2Hr1G031990.2	Barley	nucleus	74.19	60.73
KRH61563	Soybean	cytosol	53.23	60.0
KRH56367	Soybean	peroxisome	52.82	59.55
KRH69940	Soybean	peroxisome	50.81	57.27
Zm00001d022110_P002	Maize	nucleus	70.97	55.87
KRH62601	Soybean	cytosol	33.06	52.9
GSMUA_AchrUn_...	Banana	nucleus	58.47	48.01
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	30.24	34.25
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	30.24	34.25

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	EMBL:ACUP02005454	InterPro:Alfin	EnsemblPlantsGene:GLYMA_09G068500	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	UniProt:I1L1N8	InterPro:IPR013083
InterPro:IPR019787	EnsemblPlants:KRH37475	ProteinID:KRH37475	ProteinID:KRH37475.1	PFAM:PF00628	PFAM:PF12165
ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	SMART:SM00249	SUPFAM:SSF57903
UniParc:UPI00023CB338	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:6937523..6941396

Molecular Weight (calculated)

28208.8 Da

IEP (calculated)

4.925

GRAVY (calculated)

-0.842

Length

248 amino acids

Sequence
(BLAST)

001: MDSGGHYNPR TVEEVFRDFK GRRAGMIKAL TTDVEEFYQQ CDPEKENLCL YGFPTEQWEV NLPAEEVPPE LPEPALGINF ARDGMQEKDW LSLVAVHSDA
101: WLQSVAFYFG ARFGFDKADR KRLFTMINDL PTIFEVVTGS AKKQTKEKSS ENNGNKSKSS SKGRGSEPPK YSKQVKDEEE GLDEEDDDEH GETLCGACGE
201: NYASDEFWIC CDICEKWFHG KCVKITPARA EHIKHYKCPS CSNKRPRP

Best Arabidopsis Sequence Match ( AT1G14510.1 )
(BLAST)

001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA

Arabidopsis Description

AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.