Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g032770.2.1 | Tomato | nucleus | 57.48 | 84.88 |
| KRH15616 | Soybean | nucleus | 84.25 | 83.59 |
| Solyc07g041190.2.1 | Tomato | nucleus | 79.53 | 82.11 |
| Solyc01g102750.2.1 | Tomato | nucleus | 74.41 | 75.9 |
| Solyc06g062850.2.1 | Tomato | nucleus | 76.77 | 75.88 |
| Solyc01g102760.2.1 | Tomato | nucleus | 73.23 | 75.0 |
| KRH05401 | Soybean | endoplasmic reticulum, nucleus, plastid | 70.87 | 72.58 |
| Solyc05g032760.2.1 | Tomato | extracellular, nucleus | 25.98 | 68.04 |
| Solyc09g005360.2.1 | Tomato | nucleus | 61.81 | 65.15 |
| Solyc10g076690.1.1 | Tomato | nucleus | 61.42 | 65.0 |
| Solyc10g085180.1.1 | Tomato | nucleus | 59.84 | 63.33 |
| Solyc06g051420.2.1 | Tomato | nucleus | 59.84 | 62.04 |
| Solyc03g121930.2.1 | Tomato | nucleus | 61.42 | 56.52 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 29.53 | 34.25 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 29.53 | 34.25 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:K4DH77 | PFAM:PF00628 |
| PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 |
| SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc12g096040.1 | EnsemblPlants:Solyc12g096040.1.1 | UniParc:UPI0002769B97 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr12:-:65112275..65119964
Molecular Weight (calculated)
28851.6 Da
IEP (calculated)
4.803
GRAVY (calculated)
-0.715
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGAQQYNPR TVEEVFRDFK GRRAALVKAL TTDVEEFYQQ CDPEKENLCL YGFPSESWEV NLPAEEVPPE LPEPALGINF ARDGMQEKDW LSLVAVHSDA
101: WLLSVAFYFG ARFGFDRADR RRLFNMINDL PTIFEVVSGT AKKQSKDKSS MSNHSSTKSK SNSKVVQRGS ESQIKYSRPQ PKDDDEDGLD EDDEQGETLC
201: GACGENYASD EFWICCDICE VWFHGKCVKI TPARAEHIKQ YKCPSCTSSK RTRP
101: WLLSVAFYFG ARFGFDRADR RRLFNMINDL PTIFEVVSGT AKKQSKDKSS MSNHSSTKSK SNSKVVQRGS ESQIKYSRPQ PKDDDEDGLD EDDEQGETLC
201: GACGENYASD EFWICCDICE VWFHGKCVKI TPARAEHIKQ YKCPSCTSSK RTRP
001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
Arabidopsis Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.