Factsheet for Solyc06g062850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012523	Potato	nucleus	96.89	96.89
Solyc05g032770.2.1	Tomato	nucleus	52.92	79.07
Solyc07g041190.2.1	Tomato	nucleus	73.54	76.83
Solyc12g096040.1.1	Tomato	nucleus	75.88	76.77
Solyc01g102750.2.1	Tomato	nucleus	71.21	73.49
Solyc01g102760.2.1	Tomato	nucleus	70.04	72.58
Solyc05g032760.2.1	Tomato	extracellular, nucleus	26.85	71.13
Solyc09g005360.2.1	Tomato	nucleus	63.03	67.22
Solyc10g076690.1.1	Tomato	nucleus	61.87	66.25
Solyc10g085180.1.1	Tomato	nucleus	59.14	63.33
Solyc06g051420.2.1	Tomato	nucleus	59.92	62.86
Solyc03g121930.2.1	Tomato	nucleus	63.42	59.06
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	28.79	33.79
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	28.79	33.79

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	UniProt:K4C716
PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98
SMART:SM00249	SUPFAM:SSF57903	EnsemblPlantsGene:Solyc06g062850.2	EnsemblPlants:Solyc06g062850.2.1	UniParc:UPI0001CACA67	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:39647931..39653358

Molecular Weight (calculated)

29102.0 Da

IEP (calculated)

4.737

GRAVY (calculated)

-0.753

Length

257 amino acids

Sequence
(BLAST)

001: MDAGGGGEQF DSRTVEDVFG DFKRRRTALI KALTVDVEEF YQQCDPEKEN LCLYGLPNEQ WEVNLPAEEV PPELPEPALG INFARDGMED KDWLSLVAVH
101: SDSWLLSVAF YFGARFGFDK ASRKKLFNMI NELPTIYEVV TGASKKQQKE KSSGHSGKKS KSNSKARAQD YQEKLAKLQA KDEEEEGLDE QEDEDEHGET
201: LCGACGENYA ADEFWICCDI CEKWFHGKCV KITPAKAEHI KQYKCPSCSH KRPRADI

Best Arabidopsis Sequence Match ( AT3G42790.1 )
(BLAST)

001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA

Arabidopsis Description

AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.