Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006365 | Potato | nucleus | 89.86 | 89.86 |
| Solyc06g062850.2.1 | Tomato | nucleus | 59.06 | 63.42 |
| Solyc07g041190.2.1 | Tomato | nucleus | 56.52 | 63.41 |
| Solyc05g032770.2.1 | Tomato | nucleus | 39.13 | 62.79 |
| Solyc01g102750.2.1 | Tomato | nucleus | 55.43 | 61.45 |
| Solyc12g096040.1.1 | Tomato | nucleus | 56.52 | 61.42 |
| Solyc01g102760.2.1 | Tomato | nucleus | 54.71 | 60.89 |
| Solyc05g032760.2.1 | Tomato | extracellular, nucleus | 19.93 | 56.7 |
| Solyc10g076690.1.1 | Tomato | nucleus | 48.91 | 56.25 |
| Solyc09g005360.2.1 | Tomato | nucleus | 47.83 | 54.77 |
| Solyc10g085180.1.1 | Tomato | nucleus | 46.74 | 53.75 |
| Solyc06g051420.2.1 | Tomato | nucleus | 46.01 | 51.84 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 23.55 | 29.68 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 23.55 | 29.68 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:K4BMZ1 | PFAM:PF00628 |
| PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF65 | SMART:SM00249 |
| SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc03g121930.2 | EnsemblPlants:Solyc03g121930.2.1 | UniParc:UPI00027657C0 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3:-:69932743..69937570
Molecular Weight (calculated)
31518.7 Da
IEP (calculated)
4.459
GRAVY (calculated)
-0.837
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFGAKGQKK AKPIDVFKNV KGRYTGLIKA LTTDVDEFYK QCDPEKENLS LYGLPNERWE VNLPAEDSPP GLPEPVLGIN FAREGMEQKE WLSFVAYHSD
101: SWLLAIAFYA GARCGFGKAD RKKLFDMIND LPSIHEVVIG VPKTQQKEKP TVANQSKNKS KPNATKRAAE PQDMFTKMQQ KYEEDDDDDD DDDEAGEEDE
201: DEWGIEMDVE EEEGETLCGI CEGKYAKDEF WICCDHCETW FHGQCVKITA ATAEYMKQYK CPPCSSKRAR THFTEY
101: SWLLAIAFYA GARCGFGKAD RKKLFDMIND LPSIHEVVIG VPKTQQKEKP TVANQSKNKS KPNATKRAAE PQDMFTKMQQ KYEEDDDDDD DDDEAGEEDE
201: DEWGIEMDVE EEEGETLCGI CEGKYAKDEF WICCDHCETW FHGQCVKITA ATAEYMKQYK CPPCSSKRAR THFTEY
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.