Factsheet for VIT_15s0046g01270.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68892	Soybean	nucleus	49.04	42.37
KRG97141	Soybean	nucleus	49.3	42.26
KRH06502	Soybean	nucleus	47.5	41.59
KRH47938	Soybean	nucleus	46.22	40.38
VIT_02s0025g01190.t01	Wine grape	nucleus	42.64	39.22
PGSC0003DMT400000290	Potato	nucleus	44.3	34.46
CDX71720	Canola	cytosol	32.27	34.05
Bra007625.1-P	Field mustard	cytosol	32.27	34.01
CDY11374	Canola	cytosol	32.01	33.74
Solyc01g095590.2.1	Tomato	nucleus	41.61	33.61
AT2G46380.1	Thale cress	nucleus	32.65	33.2
CDY11373	Canola	cytosol	30.73	32.74
AT3G61670.1	Thale cress	nucleus	32.91	32.53
CDY42041	Canola	cytosol	26.76	32.35
Bra004541.1-P	Field mustard	nucleus	27.27	31.74
CDX80013	Canola	nucleus	26.5	31.13
GSMUA_Achr10P...	Banana	nucleus	31.11	30.99
GSMUA_Achr10P...	Banana	nucleus	29.58	30.76
GSMUA_Achr10P...	Banana	cytosol	30.09	30.28
GSMUA_Achr7P14150_001	Banana	nucleus	29.07	29.95
Os02t0258300-01	Rice	nucleus	30.22	28.03
Zm00001d053382_P002	Maize	nucleus	29.45	27.88
GSMUA_Achr3P25070_001	Banana	vacuole	24.46	27.6
KXG29961	Sorghum	nucleus	29.96	27.08
Zm00001d016081_P002	Maize	nucleus	29.32	26.88
EER88427	Sorghum	nucleus	27.02	26.51
TraesCS7A01G351500.1	Wheat	nucleus	27.66	26.25
TraesCS7B01G276600.1	Wheat	nucleus	27.66	26.09
TraesCS7D01G371500.1	Wheat	nucleus	27.53	26.0
Os06t0524300-01	Rice	nucleus	26.89	25.89
HORVU0Hr1G021800.1	Barley	nucleus	26.63	25.52
TraesCS7A01G336000.1	Wheat	nucleus	27.78	25.44
TraesCS7B01G247600.1	Wheat	cytosol	27.14	25.21
TraesCS7D01G343700.1	Wheat	cytosol	27.4	25.21
TraesCS1A01G425200.2	Wheat	nucleus	25.22	25.03
TraesCS1B01G459600.2	Wheat	plastid	25.1	24.94
TraesCS1D01G434200.2	Wheat	nucleus	24.97	24.94
Zm00001d046072_P001	Maize	cytosol	25.48	24.66
EES03295	Sorghum	nucleus	24.84	24.31
Zm00001d011373_P002	Maize	nucleus	25.22	24.29
HORVU7Hr1G082720.10	Barley	cytosol, nucleus	26.38	24.12
Zm00001d044191_P004	Maize	nucleus	24.33	23.93
Os05t0586400-01	Rice	nucleus	23.69	23.72
Os01t0621300-01	Rice	nucleus	24.46	23.67
TraesCS3D01G229400.1	Wheat	nucleus	23.56	23.09
TraesCS3B01G253700.2	Wheat	nucleus	23.3	22.86
HORVU3Hr1G055550.3	Barley	nucleus	23.05	22.7
Zm00001d009716_P001	Maize	nucleus	22.02	22.51
KXG22639	Sorghum	nucleus	22.41	22.1
HORVU1Hr1G092980.14	Barley	plastid	24.07	21.44
TraesCS3A01G224200.2	Wheat	nucleus	22.66	21.22
KRG99688	Soybean	cytosol	1.41	16.18

Protein Annotations

ArrayExpress:VIT_15s0046g01270	EMBL:AM457488	EMBL:FN596755	EnsemblPlants:VIT_15s0046g01270.t01	EnsemblPlantsGene:VIT_15s0046g01270	EntrezGene:100246542
EntrezGene:LOC100246542	InterPro:Zinc_ribbon_12	PANTHER:PTHR31105	PANTHER:PTHR31105:SF3	PFAM:PF11331	ProteinID:CAN76817
ProteinID:CAN76817.1	ProteinID:CCB62501	ProteinID:CCB62501.1	RefSeq:XP_002276718	RefSeq:XP_002276718.2	unigene:Vvi.18064
UniParc:UPI0002109C0F	UniProt:F6I6A5	wikigene:100246542	wikigene:LOC100246542	MapMan:35.2	:

Description

No Description!

Coordinates

chr15:-:18268603..18272086

Molecular Weight (calculated)

87959.3 Da

IEP (calculated)

6.814

GRAVY (calculated)

-0.904

Length

781 amino acids

Sequence
(BLAST)

001: MEKETGELKS HVQNASTSWR SERSSNWRFG ERGEVEGFRR NPRTNIGGGM RYSQSTYSDE GPSNYGYGEP LRDGSSSVDG GNRVEYFGHD PARLIRQLDE
101: LKDRLNRTCD VTDKPKEKVP LDRRMFHEEA YEDSEAWFPT SSSGPRRSSM PFFMLDKHVS EPPYFQHYTK PFPYDNRHEK GMHGSYPSMH GSNHIPGYED
201: VFGPQMLRQR RPPDQAPGHY RQQPPYAYFS GGYMEPNSNP YEPYPHDPNL HHPSCSCFLC YTRHQQVPGS IPTNALLNRR FPDIPNDPMS YHRENPVAFG
301: PRVYNPRTAN PPPMPSHDSQ SHTRLPSDLN TQTSDFVHHL PQREVLLNGR HYCRPLAGGA PFITCCNCCE LLRLPKKILL VKKNQQKIRC GACSAIIFLA
401: VNRHKIVASI HEETEKTSKE IDDSTNQLVD ERPSNSHGHV NQYSENFSSD DYDNSAYDFQ SMDREAGSVP TDQGLNSRKP ERVQNLHSSP STPENEGSQE
501: GLIAPREVDN PLEQPKKAVL SPPPPGSSLQ EHFDYSSNNL ALNRFGNGNQ SSRSDHEKVI PSKAISQQSS VKDVSVATEM EVSFNEFSNT GVSQDSGDAS
601: REHDHLGINK GEEPFLAGII KKDLRDSSRP NQTIEQGRNI VMVNGHLIPD RLVKKAEKLA GTIHPGEYWY DFYAGFWGMM GGRCLGIIPP FIEEFKYPMP
701: ENCAAGNTGV YVNGRELNQK DLDLLASRGL PTTRDRDYTI DISGGVQDRD TGEVLESLGK LAPTVEKAKR GFGMKIRRSA A

Best Arabidopsis Sequence Match ( AT3G61670.1 )
(BLAST)

001: MADSTKVRLV RCPKCENLLS EPEDSPFFQC GGCFTVLRAK TKEREADSVS VKSVEDTAKP VSASSPEKAI LDSSETSSDS DVPSLRHHHN VVPVDVESDP
101: CSKPSSLEQG NRSILLGDKD DLKSQSGRQQ DSGWDRFRKR TTKRCDSQSV INRLSTSRHP CDEGTSSSAN YFPDSLLEFQ KHLKDQSNEA IEQDRAGLLR
201: QLEKIKEQLV QSCNVATDKS KEQAPSSSSA SGLNKAPPMR FHSTGNHAVG GPSYYHQPQF PYNNNNINEA PMHHSLMHPS YGDPHRFPIH GRGPHPYFSG
301: QYVGNNNNGH DLFDAYPQQN GHFHHSSCSC YHCYDNKYWR GSAPVVPDAP YNAGFYPHES VMGFAPPHNP RTYGSRGLQP HGRWPSNFSD AQMDALSRIR
401: PPKVVLSGGS RHIRPLAGGA PFITCQNCFE LLQLPKKPEA GTKKQQKVRC GACSCLIDLS VVNNKFVLST NTASTRQGEA RVAADYTSDD YDLLGYVFHS
501: LDDEPRDLPG LISDKSQDMQ HVHSHSASLS EGELSSDSLT AKPLAEAHEN FVDYSSINHD RSGAGSRSSR SEHDKVTLSK ATAMRQNSMK EVSLASEMEV
601: NFNDYSHRNS GVSKDQQQRA KKSGFASIVK KSFKDLTKSI QNDEGNKSNV SINGHPLTER LLRKAEKQAG VIQPGNYWYD YRAGFWGVMG GPGLGILPPF
701: IEELNYPMPE NCSGGTTGVF VNGRELHRKD LDLLAGRGLP PDRDRSYIVD ITGRVIDEDT GEELDCLGKL APTIEKLKRG FGMRLPKRTT

Arabidopsis Description

Extra-large G-like protein, putative (DUF3133) [Source:UniProtKB/TrEMBL;Acc:Q9M371]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.