CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019060_P001	Maize	plastid	93.56	93.95
Os07t0190000-01	Rice	plasma membrane, plastid	86.16	88.22
TraesCS1A01G384300.1	Wheat	plastid	85.62	87.66
HORVU1Hr1G084900.9	Barley	plastid	85.48	87.64
TraesCS2D01G575800.1	Wheat	plastid	85.34	87.38
TraesCS1D01G392500.1	Wheat	plastid	84.93	86.96
TraesCS2A01G565400.1	Wheat	plastid	84.52	85.58
OQU88632	Sorghum	endoplasmic reticulum, vacuole	73.84	83.18
TraesCS2B01G626400.2	Wheat	plastid	84.79	82.1
GSMUA_Achr4P17600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	45.75	81.86
HORVU2Hr1G126150.4	Barley	plastid	84.66	81.32
GSMUA_Achr5P15060_001	Banana	plastid	75.48	79.74
GSMUA_Achr5P24730_001	Banana	plastid	76.71	79.21
KRH45527	Soybean	plastid	76.71	78.43
TraesCS1B01G411100.1	Wheat	mitochondrion	83.15	77.92
KRH45528	Soybean	plastid	75.75	77.45
KRG99484	Soybean	plastid	75.34	77.03
VIT_00s0218g00110.t01	Wine grape	plastid	75.62	76.88
PGSC0003DMT400041591	Potato	plastid	75.34	76.39
Solyc11g010850.1.1	Tomato	plastid	74.52	76.19
KRH39479	Soybean	plastid	75.21	75.21
EES19518	Sorghum	mitochondrion, plastid	68.9	69.67
EER89177	Sorghum	peroxisome	48.49	49.03

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	EntrezGene:8063650	MapMan:9.1.2.2
UniProt:C5XBX3	InterPro:Dxylulose-5-P_synthase	EnsemblPlants:EER96005	ProteinID:EER96005	ProteinID:EER96005.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661	GO:GO:0009058
GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	InterPro:IPR009014	HAMAP:MF_00315	PFAM:PF02779
PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4
MetaCyc:PWY-6891	MetaCyc:PWY-6892	MetaCyc:PWY-7560	SMART:SM00861	EnsemblPlantsGene:SORBI_3002G064500	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS
InterPro:Transketolase_C	InterPro:Transketolase_N	UniParc:UPI0001A83080	RefSeq:XP_002459484.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:6275656..6279040

Molecular Weight (calculated)

77394.7 Da

IEP (calculated)

7.174

GRAVY (calculated)

-0.070

Length

730 amino acids

Sequence
(BLAST)

001: MSPMALQASS SPSAFRAVTA TANASCRRQF QVRAQVAGGS SSSSVGADGA GKMMFSKAEP AAAATSSGSS GPWKIDFTSG EKPATPLLDT VNYPLHMKNL
101: STSELEQLAA ELRAEIVHTV SKTGGHLSSS LGVVELSVAL HHVFDTPDDK IIWDVGHQAY GHKILTGRRS RMHTIRQTSG LAGFPKRDES AHDAFGVGHS
201: STSISAALGM AVARDLLGRK NHVVSVIGDG AMTAGQAYEA MNNSGFLDAN MIVVLNDNKQ VSLPTATLDG PSKPVGALSR ALTKLQSSTK FRRLREAAKS
301: VTKQIGGPTH EVAAKVDEYA RGMMSASGSS LFEELGLYYI GPVDGHSVED LVTIFEKVKS MPAPGPVLIH VVTEKGKGYP PAEAAADRMH GVVKFEPSTG
401: KQLKSKSSTL SYTQYFAESL IREADADDKV VAIHAAMGGG TGLNYFQKRF PERCFDVGIA EQHAVTFAAG LAAEGLKPFC AIYSSFLQRG YDQVVHDVDL
501: QRLPVRFALD RAGLVGADGP THCGAFDVTY MACLPNMVVM APADEAELMH MVATAAAIDD RPSCFRFPRG NGVGAVLPAG NKGTPMEVGR GRVLVGGNRV
601: ALLGYGTMVQ ACLKAAEALK EQDVYVTVAD ARFCKPLDTG LIRELAAEHE VLITAEEGSI GGFGSHVAHY LSLTGLLDGP LKLRSMFLPD RYIDHGAPQD
701: QMEEAGLTPR HIAATVLSLL GRPMEAMQLK

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.