CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45527	Soybean	plastid	83.7	85.57
KRH45528	Soybean	plastid	83.29	85.15
KRG99484	Soybean	plastid	82.47	84.31
VIT_00s0218g00110.t01	Wine grape	plastid	78.49	79.81
GSMUA_Achr4P17600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	44.52	79.66
Solyc11g010850.1.1	Tomato	plastid	76.58	78.29
PGSC0003DMT400041591	Potato	plastid	76.71	77.78
GSMUA_Achr5P15060_001	Banana	plastid	73.56	77.71
TraesCS2D01G575800.1	Wheat	plastid	75.34	77.14
Os07t0190000-01	Rice	plasma membrane, plastid	75.21	77.0
GSMUA_Achr5P24730_001	Banana	plastid	74.52	76.94
HORVU1Hr1G084900.9	Barley	plastid	74.79	76.69
TraesCS2A01G565400.1	Wheat	plastid	74.79	75.73
TraesCS1A01G384300.1	Wheat	plastid	73.84	75.6
TraesCS1D01G392500.1	Wheat	plastid	73.7	75.46
Zm00001d019060_P001	Maize	plastid	74.93	75.24
EER96005	Sorghum	plastid	75.21	75.21
TraesCS2B01G626400.2	Wheat	plastid	75.34	72.94
HORVU2Hr1G126150.4	Barley	plastid	74.52	71.58
KRH18981	Soybean	endoplasmic reticulum, extracellular	1.92	70.0
KRH02173	Soybean	plastid	67.67	69.38
OQU88632	Sorghum	endoplasmic reticulum, vacuole	61.51	69.29
KRH02914	Soybean	plastid	68.9	69.09
TraesCS1B01G411100.1	Wheat	mitochondrion	73.7	69.06
KRH20991	Soybean	plastid	68.08	68.93
KRH11287	Soybean	peroxisome, plastid	40.0	67.59
KRH50940	Soybean	plastid	67.4	67.12
KRH16140	Soybean	mitochondrion, plastid	9.59	53.44
KRH61817	Soybean	plastid	52.47	53.12
KRH52494	Soybean	plastid	52.05	53.07

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	EntrezGene:100799481	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2
UniProt:A0A0R0IAU8	EMBL:ACUP02005935	InterPro:Dxylulose-5-P_synthase	EnsemblPlantsGene:GLYMA_09G200500	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661	GO:GO:0009058	GO:GO:0009987
GO:GO:0016114	GO:GO:0016740	InterPro:IPR009014	EnsemblPlants:KRH39479	ProteinID:KRH39479	ProteinID:KRH39479.1
HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801	ScanProsite:PS00802
PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	MetaCyc:PWY-6891	MetaCyc:PWY-6892	MetaCyc:PWY-7560	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N	UniParc:UPI0006EE0DE6	:	:

Description

hypothetical protein

Coordinates

chr9:-:42480405..42486826

Molecular Weight (calculated)

78898.2 Da

IEP (calculated)

7.591

GRAVY (calculated)

-0.068

Length

730 amino acids

Sequence
(BLAST)

001: MALSATFVKT NRSILPFHQN SSPNHGRIKQ LCVRASASSL DDDEDRTVVR KEKDGWKIKF SSQKPATPLL DTINYPAHMK NLSLQDLEQL AAELRADVVH
101: SVSNTGGHLS SSLGVVELTV ALHHVFNTPE DKIIWDVGHQ AYPHKILTGR RSRMHTIRKT SGLAGFPKRE ESVYDVFGTG HSSTSISAGL GMAVARDLLG
201: KKNSIVSVIG DGAMTAGQAY EAMNNAGFLD SNMIIILNDN KQVSLPTATI DGPATPVGAL SSALSKIQAS TKFRKLREAA KGITKQIGGT THQLAAKVDE
301: YARGMISGSG STLFEELGLY YIGPVDGHNI EDLVTILEKV KEMPAPGPTL IHVVTEKGKG YPPAEVAADK MHGVVKFVPT SGHQLKPKSS TLTYTQYFAE
401: SLIKEAEIDN KIVAIHAAMG GGTGLNYFHK RFPDRCFDVG IAEQHAVTFA AGLAAEGLKP FCAIYSSFLQ RGYDQVVHDV DLQKLPVRFA MDRAGLVGAD
501: GPTHCGAFDI TYMACLPNMV VMAPSDEAEL MHMVATAAAI DDRPSCFRFP RGNGIGASLP LNNKGTPLEI GKGRILRQGS RVAILGYGSV VQQCLQAAQM
601: LKPLDISVTV ADARFCKPLD TDLIKLLGKE HEFLLTVEEG SIGGFGSHVS HFLSIVGLLD GPLKWRPMML PDRYIEHGSP QDQTEEAGLS SKNIAATVLS
701: LLERPKEALL FKSLIVLFIS ITWFHFPAEA

Best Arabidopsis Sequence Match ( AT3G21500.1 )
(BLAST)

001: MSYQTQINKF SQMALSVFAF PSYINRNPSL KYLKPSSMSS TKYSKVRATT FSEKGEYYSN RPPTPLLDTI NHPMHMKNLS IKELKVLSDE LRSDVIFNVS
101: KTGGHLGSNL GVVELTVALH YIFNTPHDKI LWDVGHQSYP HKILTGRRGK MKTIRQTNGL SGYTKRRESE HDSFGTGHSS TTLSAGLGMA VGRDLKGMNN
201: SVVSVIGDGA MTAGQAYEAM NNAGYLHSNM IVILNDNKQV SLPTANLDGP TQPVGALSCA LSRLQSNCGM IRETSSTLFE ELGFHYVGPV DGHNIDDLVS
301: ILETLKSTKT IGPVLIHVVT EKGRGYPYAE RADDKYHVLK FDPETGKQFK NISKTQSYTS CFVEALIAEA EADKDIVAIH AAMGGGTMLN LFESRFPTRC
401: FDVGIAEQHA VTFAAGLACE GLKPFCTIYS SFMQRAYDQV VHDVDLQKLP VRFAIDRAGL MGADGPTHCG AFDVTFMACL PNMIVMAPSD EAELFNMVAT
501: AAAIDDRPSC FRYHRGNGIG VSLPPGNKGV PLQIGRGRIL RDGERVALLG YGSAVQRCLE AASMLSERGL KITVADARFC KPLDVALIRS LAKSHEVLIT
601: VEEGSIGGFG SHVVQFLALD GLLDGKLKVY RTWITNGSTS

Arabidopsis Description

DXPS11-deoxy-D-xylulose 5-phosphate synthase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTC7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.